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4C2Y
Asym. Unit
Info
Asym.Unit (162 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (80 KB)
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(1)
Title
:
HUMAN N-MYRISTOYLTRANSFERASE (NMT1) WITH MYRISTOYL-COA CO-FACTOR
Authors
:
E. Thinon, R. A. Serwa, J. A. Brannigan, U. Brassat, M. H. Wright, W. P. He A. J. Wilkinson, D. J. Mann, E. W. Tate
Date
:
20 Aug 13 (Deposition) - 01 Oct 14 (Release) - 08 Oct 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.64
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Myristoylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Thinon, R. A. Serwa, M. Broncel, J. A. Brannigan, U. Brassat, M. H. Wright, W. P. Heal, A. J. Wilkinson, D. J. Mann, E. W. Tate
Global Profiling Of Co- And Post-Translationally N-Myristoylated Proteomes In Human Cells.
Nat. Commun. V. 5 4919 2014
[
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: TETRADECANOYL-COA (MYAa)
4b: TETRADECANOYL-COA (MYAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
2
Ligand/Ion
CITRIC ACID
2
GOL
7
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
MYA
2
Ligand/Ion
TETRADECANOYL-COA
[
close Hetero Component info
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:115 , TYR B:117 , GLN B:118 , PHE B:119 , TRP B:120 , ASN B:179 , TYR B:180 , VAL B:181 , ASN B:246 , PHE B:247 , LEU B:248 , CYS B:249 , VAL B:250 , ARG B:255 , SER B:256 , LYS B:257 , ARG B:258 , VAL B:259 , ALA B:260 , PRO B:261 , THR B:268 , VAL B:271 , PHE B:277 , TYR B:281 , THR B:282 , LEU B:287 , TYR B:479 , MG B:1498 , HOH B:2004 , HOH B:2224 , HOH B:2226 , HOH B:2402 , HOH B:2403 , HOH B:2404 , HOH B:2405 , HOH B:2406 , HOH B:2407
BINDING SITE FOR RESIDUE MYA B1497
02
AC2
SOFTWARE
TYR A:117 , GLN A:118 , PHE A:119 , TRP A:120 , ASN A:179 , TYR A:180 , VAL A:181 , PHE A:247 , LEU A:248 , CYS A:249 , VAL A:250 , ARG A:255 , SER A:256 , LYS A:257 , ARG A:258 , VAL A:259 , ALA A:260 , PRO A:261 , THR A:268 , VAL A:271 , PHE A:277 , GLN A:278 , TYR A:281 , THR A:282 , LEU A:287 , TYR A:479 , MG A:1498 , HOH A:2002 , HOH A:2217 , HOH A:2218 , HOH A:2378 , HOH A:2379 , HOH A:2380 , HOH A:2381 , HOH A:2382 , HOH A:2383 , HOH A:2384
BINDING SITE FOR RESIDUE MYA A1497
03
AC3
SOFTWARE
LEU A:254 , SER A:256 , LYS A:257 , ARG A:258 , VAL A:259 , MYA A:1497
BINDING SITE FOR RESIDUE MG A1498
04
AC4
SOFTWARE
LEU B:254 , SER B:256 , LYS B:257 , ARG B:258 , VAL B:259 , MYA B:1497
BINDING SITE FOR RESIDUE MG B1498
05
AC5
SOFTWARE
THR B:122 , GLN B:123 , PRO B:124 , GLU B:139 , LYS B:142 , ARG B:265 , ALA B:336 , ASN B:389 , ALA B:390 , HOH B:2230 , HOH B:2286 , HOH B:2408
BINDING SITE FOR RESIDUE CIT B1499
06
AC6
SOFTWARE
THR A:122 , GLN A:123 , PRO A:124 , GLU A:139 , LYS A:142 , ARG A:265 , ALA A:336 , ASN A:389 , ALA A:390 , HOH A:2222 , HOH A:2273 , HOH A:2274 , HOH A:2385 , HOH A:2386
BINDING SITE FOR RESIDUE CIT A1499
07
AC7
SOFTWARE
PRO A:126 , LYS A:289 , PRO A:290 , VAL A:291 , LEU A:478 , TRP A:481 , LYS A:482 , CYS A:483 , SER A:485 , HOH A:2243
BINDING SITE FOR RESIDUE GOL A1500
08
AC8
SOFTWARE
TYR A:296 , TYR A:401 , LEU A:403 , LEU A:474 , LEU A:495 , GLN A:496 , HOH A:2238
BINDING SITE FOR RESIDUE GOL A1501
09
AC9
SOFTWARE
ASP A:183 , PHE A:188 , HOH A:2118 , HOH A:2389
BINDING SITE FOR RESIDUE GOL A1502
10
BC1
SOFTWARE
PRO B:126 , LYS B:289 , PRO B:290 , VAL B:291 , TYR B:477 , LEU B:478 , TRP B:481 , LYS B:482 , CYS B:483 , HOH B:2254
BINDING SITE FOR RESIDUE GOL B1500
11
BC2
SOFTWARE
ASN B:133 , THR B:134 , PRO B:149 , TRP B:158 , HOH B:2018 , HOH B:2051 , HOH B:2064 , HOH B:2066
BINDING SITE FOR RESIDUE GOL B1501
12
BC3
SOFTWARE
TYR B:192 , TYR B:296 , TYR B:401 , LEU B:403 , LEU B:474 , LEU B:495 , GLN B:496 , HOH B:2247 , HOH B:2262
BINDING SITE FOR RESIDUE GOL B1502
13
BC4
SOFTWARE
PRO A:204 , GLY A:205 , GLU A:369 , HOH A:2138 , LEU B:207 , GLN B:209 , GLU B:274 , HOH B:2411 , HOH B:2412
BINDING SITE FOR RESIDUE GOL B1503
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: NMT_1 (A:244-252,B:244-252)
2: NMT_2 (A:466-472,B:466-472)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NMT_1
PS00975
Myristoyl-CoA:protein N-myristoyltransferase signature 1.
NMT1_HUMAN
244-252
2
A:244-252
B:244-252
2
NMT_2
PS00976
Myristoyl-CoA:protein N-myristoyltransferase signature 2.
NMT1_HUMAN
466-472
2
A:466-472
B:466-472
[
close PROSITE info
]
Exons
(10, 20)
Info
All Exons
Exon 1.3 (A:115-129 | B:115-129)
Exon 1.4 (A:129-168 | B:129-168)
Exon 1.5 (A:169-199 | B:169-199)
Exon 1.6 (A:199-238 | B:199-238)
Exon 1.7 (A:238-295 | B:238-295)
Exon 1.8 (A:295-331 | B:295-331)
Exon 1.9 (A:332-388 | B:332-388)
Exon 1.10 (A:389-444 | B:389-444)
Exon 1.11 (A:445-490 | B:445-490)
Exon 1.12 (A:491-496 | B:491-496)
View:
Select:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000258960
1
ENSE00001324312
chr17:
43138680-43138828
149
NMT1_HUMAN
1-44
44
0
-
-
1.2
ENST00000258960
2
ENSE00001134100
chr17:
43159012-43159120
109
NMT1_HUMAN
44-80
37
0
-
-
1.3
ENST00000258960
3
ENSE00000924941
chr17:
43163876-43164020
145
NMT1_HUMAN
81-129
49
2
A:115-129
B:115-129
15
15
1.4
ENST00000258960
4
ENSE00000924940
chr17:
43171053-43171171
119
NMT1_HUMAN
129-168
40
2
A:129-168
B:129-168
40
40
1.5
ENST00000258960
5
ENSE00000924939
chr17:
43173562-43173653
92
NMT1_HUMAN
169-199
31
2
A:169-199
B:169-199
31
31
1.6
ENST00000258960
6
ENSE00000924938
chr17:
43174496-43174612
117
NMT1_HUMAN
199-238
40
2
A:199-238
B:199-238
40
40
1.7
ENST00000258960
7
ENSE00000924937
chr17:
43175750-43175920
171
NMT1_HUMAN
238-295
58
2
A:238-295
B:238-295
58
58
1.8
ENST00000258960
8
ENSE00000924936
chr17:
43176773-43176881
109
NMT1_HUMAN
295-331
37
2
A:295-331
B:295-331
37
37
1.9
ENST00000258960
9
ENSE00000924935
chr17:
43180319-43180489
171
NMT1_HUMAN
332-388
57
2
A:332-388
B:332-388
57
57
1.10
ENST00000258960
10
ENSE00000924934
chr17:
43181077-43181244
168
NMT1_HUMAN
389-444
56
2
A:389-444
B:389-444
56
56
1.11
ENST00000258960
11
ENSE00000924933
chr17:
43182227-43182364
138
NMT1_HUMAN
445-490
46
2
A:445-490
B:445-490
46
46
1.12
ENST00000258960
12
ENSE00001110185
chr17:
43182987-43186377
3391
NMT1_HUMAN
491-496
6
2
A:491-496
B:491-496
6
6
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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