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4C2L
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (67 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDO-XYLOGALACTURONAN HYDROLASE FROM ASPERGILLUS TUBINGENSIS
Authors
:
H. J. Rozeboom, G. Beldman, H. A. Schols, B. W. Dijkstra
Date
:
19 Aug 13 (Deposition) - 25 Sep 13 (Release) - 04 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Polygalacturonan, Gh28
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. J. Rozeboom, G. Beldman, H. A. Schols, B. W. Dijkstra
Crystal Structure Of Endo-Xylogalacturonan Hydrolase From Aspergillus Tubingensis.
Febs J. V. 280 6061 2013
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:234 , GLY A:256 , SER A:257 , LYS A:286 , TYR A:322 , HOH A:2270 , HOH A:2292
BINDING SITE FOR RESIDUE SO4 A1407
02
AC2
SOFTWARE
PRO A:51 , ARG A:108 , THR A:109 , HOH A:2120 , HOH A:2123 , HOH A:2124 , HOH A:2128 , HOH A:2451 , HOH A:2452
BINDING SITE FOR RESIDUE SO4 A1408
03
AC3
SOFTWARE
ARG A:168 , LYS A:170 , GOL A:1414 , HOH A:2453 , HOH A:2454
BINDING SITE FOR RESIDUE SO4 A1409
04
AC4
SOFTWARE
HIS A:251 , LYS A:286 , TYR A:322 , HOH A:2247 , HOH A:2270 , HOH A:2271 , HOH A:2320 , HOH A:2321 , HOH A:2363
BINDING SITE FOR RESIDUE SO4 A1410
05
AC5
SOFTWARE
ASN A:305 , ASP A:306 , HOH A:2342 , HOH A:2343 , HOH A:2344 , HOH A:2455
BINDING SITE FOR RESIDUE SO4 A1411
06
AC6
SOFTWARE
LYS A:267 , ASN A:268 , HOH A:2278 , HOH A:2308 , HOH A:2456
BINDING SITE FOR RESIDUE SO4 A1412
07
AC7
SOFTWARE
ASN A:62 , ASN A:116 , HOH A:2032 , HOH A:2457
BINDING SITE FOR RESIDUE SO4 A1413
08
AC8
SOFTWARE
ASP A:132 , LYS A:170 , LYS A:198 , SO4 A:1409 , HOH A:2096 , HOH A:2158
BINDING SITE FOR RESIDUE GOL A1414
09
AC9
SOFTWARE
VAL A:36 , THR A:38 , HOH A:2436 , HOH A:2444 , HOH A:2445
BINDING SITE FOR MONO-SACCHARIDE MAN A 410 BOUND TO THR A 38
10
BC1
SOFTWARE
ASN A:278 , HOH A:2446 , HOH A:2447
BINDING SITE FOR MONO-SACCHARIDE NAG A 411 BOUND TO ASN A 278
11
BC2
SOFTWARE
TYR A:239 , THR A:241 , ASN A:268 , TYR A:270 , ASN A:301 , HOH A:2280 , HOH A:2281 , HOH A:2449 , HOH A:2450
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 412 THROUGH NAG A 413 BOUND TO ASN A 301
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4c2la_ (A:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Single-stranded right-handed beta-helix
(140)
Superfamily
:
Pectin lyase-like
(89)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Aspergillus tubingensis [TaxId: 5068]
(1)
1a
d4c2la_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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Asym.Unit (72 KB)
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Header - Biol.Unit 1
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