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4C1K
Biol. Unit 2
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Asym.Unit (266 KB)
Biol.Unit 1 (175 KB)
Biol.Unit 2 (175 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PYROCOCCUS FURIOSUS 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE
Authors
:
A. R. Nazmi, L. R. Schofield, R. C. J. Dobson, G. B. Jameson, E. J. Parker
Date
:
13 Aug 13 (Deposition) - 20 Nov 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: E,F (2x)
Biol. Unit 2: A,B,C,D (1x)
Keywords
:
Transferase, Shikimate Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. R. Nazmi, L. R. Schofield, R. C. J. Dobson, G. B. Jameson, E. J. Parker
Destabilization Of The Homotetrameric Assembly Of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase From The Hyperthermophile Pyrococcus Furiosus Enhances Enzymatic Activity
J. Mol. Biol. V. 426 656 2014
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: NONAETHYLENE GLYCOL (2PEa)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: CARBONATE ION (CO3a)
4b: CARBONATE ION (CO3b)
4c: CARBONATE ION (CO3c)
4d: CARBONATE ION (CO3d)
5a: PHOSPHOENOLPYRUVATE (PEPa)
5b: PHOSPHOENOLPYRUVATE (PEPb)
5c: PHOSPHOENOLPYRUVATE (PEPc)
5d: PHOSPHOENOLPYRUVATE (PEPd)
5e: PHOSPHOENOLPYRUVATE (PEPe)
5f: PHOSPHOENOLPYRUVATE (PEPf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2PE
-1
Ligand/Ion
NONAETHYLENE GLYCOL
2
CD
-1
Ligand/Ion
CADMIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
CO3
4
Ligand/Ion
CARBONATE ION
5
PEP
4
Ligand/Ion
PHOSPHOENOLPYRUVATE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:114 , ARG A:115 , LYS A:136 , ARG A:166 , PEP A:1264 , HOH A:2027 , HOH A:2038
BINDING SITE FOR RESIDUE CO3 A1263
02
AC2
SOFTWARE
ARG A:55 , LYS A:60 , GLN A:111 , GLY A:113 , ALA A:114 , ARG A:115 , LYS A:136 , ARG A:166 , HIS A:201 , CO3 A:1263 , CD A:1265 , HOH A:2009 , HOH A:2027 , HOH A:2038
BINDING SITE FOR RESIDUE PEP A1264
03
AC3
SOFTWARE
CYS A:31 , HIS A:201 , GLU A:227 , ASP A:238 , PEP A:1264 , HOH A:2009
BINDING SITE FOR RESIDUE CD A1265
04
AC4
SOFTWARE
ARG B:55 , LYS B:60 , GLN B:111 , GLY B:113 , ALA B:114 , ARG B:115 , LYS B:136 , ARG B:166 , HIS B:201 , CO3 B:1265 , HOH B:2026 , HOH B:2028
BINDING SITE FOR RESIDUE PEP B1263
05
AC5
SOFTWARE
CYS B:31 , HIS B:201 , GLU B:227 , ASP B:238 , HOH B:2003
BINDING SITE FOR RESIDUE CD B1264
06
AC6
SOFTWARE
GLY B:113 , ALA B:114 , ARG B:115 , LYS B:136 , ARG B:166 , PEP B:1263 , HOH B:2026
BINDING SITE FOR RESIDUE CO3 B1265
07
AC7
SOFTWARE
ARG C:55 , LYS C:60 , GLN C:111 , GLY C:113 , ALA C:114 , ARG C:115 , LYS C:136 , ARG C:166 , HIS C:201 , CO3 C:1264 , HOH C:2005 , HOH C:2029
BINDING SITE FOR RESIDUE PEP C1263
08
AC8
SOFTWARE
GLY C:113 , ALA C:114 , ARG C:115 , LYS C:136 , ARG C:166 , PEP C:1263 , HOH C:2029
BINDING SITE FOR RESIDUE CO3 C1264
09
AC9
SOFTWARE
CYS C:31 , HIS C:201 , GLU C:227 , ASP C:238 , HOH C:2005
BINDING SITE FOR RESIDUE CD C1265
10
BC1
SOFTWARE
ALA D:114 , ARG D:115 , LYS D:136 , ARG D:166 , HIS D:201 , PEP D:1264 , HOH D:2049
BINDING SITE FOR RESIDUE CO3 D1263
11
BC2
SOFTWARE
ARG D:55 , LYS D:60 , PRO D:61 , GLU D:93 , GLN D:111 , GLY D:113 , ALA D:114 , ARG D:115 , LYS D:136 , ARG D:166 , HIS D:201 , CO3 D:1263 , HOH D:2019 , HOH D:2049
BINDING SITE FOR RESIDUE PEP D1264
12
BC3
SOFTWARE
CYS D:31 , HIS D:201 , GLU D:227 , ASP D:238 , HOH D:2019
BINDING SITE FOR RESIDUE CD D1265
13
BC4
SOFTWARE
MET D:1 , LYS D:2 , TYR D:3 , SER D:4 , GLU D:6 , TYR D:148 , MET E:1 , SER E:4 , GLU E:6 , HOH E:2083 , HOH E:2084
BINDING SITE FOR RESIDUE 2PE E1265
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (266 KB)
Header - Asym.Unit
Biol.Unit 1 (175 KB)
Header - Biol.Unit 1
Biol.Unit 2 (175 KB)
Header - Biol.Unit 2
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