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4C1E
Asym. Unit
Info
Asym.Unit (179 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH D-CAPTOPRIL
Authors
:
D. Zollman, J. Brem, M. A. Mcdonough, S. S. Vanberkel, C. J. Schofield
Date
:
12 Aug 13 (Deposition) - 27 Aug 14 (Release) - 13 Jan 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Mbl. Metallo-Beta-Lactamase, Antibiotic Resistance
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Brem, S. S. Van Berkel, D. Zollman, S. Y. Lee, O. Gileadi, P. J. Mchugh, T. R. Walsh, M. A. Mcdonough, C. J. Schofield
Structural Basis Of Metallo-Beta-Lactamase Inhibition By Captopril Stereoisomers.
Antimicrob. Agents Chemother. V. 60 142 2015
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: FORMIC ACID (FMTa)
1b: FORMIC ACID (FMTb)
1c: FORMIC ACID (FMTc)
1d: FORMIC ACID (FMTd)
1e: FORMIC ACID (FMTe)
2a: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-... (MCOa)
2b: 1-(3-MERCAPTO-2-METHYL-PROPIONYL)-... (MCOb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FMT
5
Ligand/Ion
FORMIC ACID
2
MCO
2
Ligand/Ion
1-(3-MERCAPTO-2-METHYL-PROPIONYL)-PYRROLIDINE-2-CARBOXYLIC ACID
3
NA
2
Ligand/Ion
SODIUM ION
4
ZN
6
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:171 , HIS A:229 , HOH A:2188 , HOH A:2189
BINDING SITE FOR RESIDUE NA A 300
02
AC2
SOFTWARE
PHE A:62 , TYR A:67 , TRP A:87 , HIS A:116 , ASP A:118 , HIS A:179 , ARG A:205 , GLY A:209 , ASN A:210 , HIS A:240 , ZN A:501 , ZN A:502 , HOH A:2217 , HOH A:2227 , HOH A:2229
BINDING SITE FOR RESIDUE MCO A 350
03
AC3
SOFTWARE
ALA A:132 , THR A:133 , THR A:152 , HIS A:153 , HIS A:251 , FMT A:401 , ZN A:503 , HOH A:2138
BINDING SITE FOR RESIDUE FMT A 400
04
AC4
SOFTWARE
ALA A:132 , HIS A:153 , HIS A:251 , ASN A:254 , FMT A:400 , ZN A:503 , HOH A:2140 , HOH A:2219
BINDING SITE FOR RESIDUE FMT A 401
05
AC5
SOFTWARE
HIS A:153 , LEU A:203 , HOH A:2162 , HOH A:2165 , HOH A:2215 , HOH A:2292
BINDING SITE FOR RESIDUE FMT A 403
06
AC6
SOFTWARE
HIS A:114 , HIS A:116 , HIS A:179 , MCO A:350
BINDING SITE FOR RESIDUE ZN A 501
07
AC7
SOFTWARE
ASP A:118 , CYS A:198 , HIS A:240 , MCO A:350
BINDING SITE FOR RESIDUE ZN A 502
08
AC8
SOFTWARE
HIS A:153 , HIS A:251 , FMT A:400 , FMT A:401
BINDING SITE FOR RESIDUE ZN A 503
09
AC9
SOFTWARE
GLU B:171 , HIS B:229 , HOH B:2154 , HOH B:2155
BINDING SITE FOR RESIDUE NA B 300
10
BC1
SOFTWARE
PHE B:62 , TYR B:67 , TRP B:87 , HIS B:116 , ASP B:118 , HIS B:179 , ARG B:205 , GLY B:209 , ASN B:210 , HIS B:240 , ZN B:501 , ZN B:502 , HOH B:2173 , HOH B:2181 , HOH B:2241
BINDING SITE FOR RESIDUE MCO B 350
11
BC2
SOFTWARE
ALA B:132 , HIS B:153 , FMT B:401 , ZN B:503 , HOH B:2111 , HOH B:2242
BINDING SITE FOR RESIDUE FMT B 400
12
BC3
SOFTWARE
ALA B:132 , THR B:133 , THR B:152 , HIS B:153 , FMT B:400 , ZN B:503 , HOH B:2110
BINDING SITE FOR RESIDUE FMT B 401
13
BC4
SOFTWARE
HIS B:114 , HIS B:116 , HIS B:179 , MCO B:350
BINDING SITE FOR RESIDUE ZN B 501
14
BC5
SOFTWARE
ASP B:118 , CYS B:198 , HIS B:240 , MCO B:350
BINDING SITE FOR RESIDUE ZN B 502
15
BC6
SOFTWARE
HIS B:153 , FMT B:400 , FMT B:401
BINDING SITE FOR RESIDUE ZN B 503
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
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