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4C0Q
Asym. Unit
Info
Asym.Unit (692 KB)
Biol.Unit 1 (361 KB)
Biol.Unit 2 (325 KB)
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(1)
Title
:
TRANSPORTIN 3 IN COMPLEX WITH RAN(Q69L)GTP
Authors
:
G. N. Maertens, S. Hare, P. Cherepanov
Date
:
06 Aug 13 (Deposition) - 22 Jan 14 (Release) - 05 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.42
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Transport Protein-Gtp-Binding Protein Complex, Nuclear Import, Heat Repeat, Importin Beta
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. N. Maertens, N. J. Cook, W. Wang, S. Hare, S. S. Gupta, I. Oztop, K. Lee V. E. Pye, O. Cosnefroy, A. P. Snijders, V. N. Kewalramani, A. Fassati, A. Engelman, P. Cherepanov
Structural Basis For Nuclear Import Of Splicing Factors By Human Transportin 3.
Proc. Natl. Acad. Sci. Usa V. 111 2728 2014
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Hetero Components
(3, 46)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
MSE
42
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR D:24 , THR D:42 , ASP D:65 , GTP D:1190
BINDING SITE FOR RESIDUE MG D1189
2
AC2
SOFTWARE
THR C:24 , THR C:42 , GTP C:1179
BINDING SITE FOR RESIDUE MG C1178
3
AC3
SOFTWARE
GLY D:19 , GLY D:20 , GLY D:22 , LYS D:23 , THR D:24 , THR D:25 , LYS D:37 , LYS D:38 , TYR D:39 , ALA D:41 , THR D:42 , THR D:66 , ALA D:67 , GLY D:68 , LEU D:69 , ASN D:122 , LYS D:123 , ASP D:125 , SER D:150 , ALA D:151 , LYS D:152 , MG D:1189
BINDING SITE FOR RESIDUE GTP D1190
4
AC4
SOFTWARE
GLY C:19 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , THR C:24 , THR C:25 , LYS C:37 , LYS C:38 , TYR C:39 , ALA C:41 , THR C:42 , THR C:66 , ALA C:67 , GLY C:68 , LEU C:69 , ASN C:122 , LYS C:123 , ASP C:125 , ILE C:126 , SER C:150 , ALA C:151 , LYS C:152 , MG C:1178
BINDING SITE FOR RESIDUE GTP C1179
[
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SAPs(SNPs)/Variants
(2, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051900 (R95I, chain C/D, )
2: VAR_071822 (R818P, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
C/D
R
95
I
2
UniProt
VAR_071822
R
818
P
TNPO3_HUMAN
Disease (LGMD1F)
---
A
R
818
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.2a (C:9-32 | D:9-32)
Exon 1.2d (C:33-61 | D:33-61)
Exon 1.3 (C:61-103 | D:61-103)
Exon 1.5b (C:103-165 | D:103-165)
Exon 1.6c (C:166-177 | D:166-188 (gaps))
View:
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.2d
3: Boundary 1.2d/1.3
4: Boundary 1.3/1.5b
5: Boundary 1.5b/1.6c
6: Boundary 1.6c/1.7c
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000392369
2a
ENSE00001511608
chr12:
131356783-131357174
392
RAN_HUMAN
1-32
32
2
C:9-32
D:9-32
24
24
1.2d
ENST00000392369
2d
ENSE00000903701
chr12:
131357381-131357465
85
RAN_HUMAN
33-61
29
2
C:33-61
D:33-61
29
29
1.3
ENST00000392369
3
ENSE00000903703
chr12:
131357548-131357673
126
RAN_HUMAN
61-103
43
2
C:61-103
D:61-103
43
43
1.5b
ENST00000392369
5b
ENSE00000903705
chr12:
131359091-131359278
188
RAN_HUMAN
103-165
63
2
C:103-165
D:103-165
63
63
1.6c
ENST00000392369
6c
ENSE00000903707
chr12:
131360157-131360327
171
RAN_HUMAN
166-222
57
2
C:166-177
D:166-188 (gaps)
12
27
1.7c
ENST00000392369
7c
ENSE00001511600
chr12:
131360427-131360826
400
RAN_HUMAN
223-236
14
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Sidechain
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Protein & NOT Site
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Chain C
Chain D
Asymmetric Unit 1
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Example Commands
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (692 KB)
Header - Asym.Unit
Biol.Unit 1 (361 KB)
Header - Biol.Unit 1
Biol.Unit 2 (325 KB)
Header - Biol.Unit 2
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