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Getting 'Exon' information from database.
4BYA
Asym. Unit
Info
Asym.Unit (392 KB)
Biol.Unit 1 (21 KB)
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Models
(20 )
Title
:
CALMODULIN, C-TERMINAL DOMAIN, M144H MUTANT
Authors
:
Y. S. Moroz, Y. Wu, N. A. J. Van Nuland, I. V. Korendovych
Date
:
18 Jul 13 (Deposition) - 18 Jun 14 (Release) - 16 Dec 15 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Biol. Unit 1: A (1x)
Keywords
:
Calmodulin, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. S. Moroz, T. T. Dunston, O. V. Makhlynets, O. V. Moroz, Y. Wu, J. H. Yoon, A. B. Olsen, J. M. Mclaughlin, K. L. Mack, P. M. Gosavi, N. A. J. Van Nuland, I. V. Korendovych
New Tricks For Old Proteins: Single Mutations In A Nonenzymatic Protein Give Rise To Various Enzymatic Activities.
J. Am. Chem. Soc. V. 137 14905 2015
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:20 , ASP A:22 , ASN A:24 , TYR A:26 , GLU A:31
BINDING SITE FOR RESIDUE CA A 76
2
AC2
SOFTWARE
ASP A:56 , ASP A:58 , ASP A:60 , GLN A:62 , ASN A:64 , GLU A:67
BINDING SITE FOR RESIDUE CA A 77
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
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PROSITE Patterns/Profiles
(2, 5)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (-|A:3-5|A:7-42|A:43-75)
2: EF_HAND_1 (-|-|A:20-32|A:56-68)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
CALM_CHICK
8-43
44-79
81-116
117-149
3
-
A:3-5
A:7-42
A:43-75
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
CALM_CHICK
21-33
57-69
94-106
130-142
2
-
-
A:20-32
A:56-68
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:1-2)
Exon 1.4 (A:3-28)
Exon 1.5a (A:29-73 (gaps))
Exon 1.6a (A:73-75)
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All Exon Boundaries
1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4
3: Boundary 1.4/1.5a
4: Boundary 1.5a/1.6a
5: Boundary 1.6a/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENSGALT00000016279
2a
ENSGALE00000108322
chr3:
28345291-28345260
32
F2Z4K8_CHICK
1-11
11
0
-
-
1.3b
ENSGALT00000016279
3b
ENSGALE00000108320
chr3:
28340224-28340081
144
F2Z4K8_CHICK
11-59
49
1
A:1-2
2
1.4
ENSGALT00000016279
4
ENSGALE00000108321
chr3:
28340004-28339898
107
F2Z4K8_CHICK
59-94
36
1
A:3-28
26
1.5a
ENSGALT00000016279
5a
ENSGALE00000108319
chr3:
28339027-28338892
136
F2Z4K8_CHICK
95-140
46
1
A:29-73 (gaps)
46
1.6a
ENSGALT00000016279
6a
ENSGALE00000108317
chr3:
28337689-28337661
29
F2Z4K8_CHICK
140-148
9
1
A:73-75
3
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (392 KB)
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