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4BXS
Asym. Unit
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Asym.Unit (249 KB)
Biol.Unit 1 (234 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PROTHROMBINASE COMPLEX FROM THE VENOM OF PSEUDONAJA TEXTILIS
Authors
:
B. C. Lechtenberg, T. A. Murray-Rust, D. J. D. Johnson, T. E. Adams, S. Krishnaswamy, R. M. Camire, J. A. Huntington
Date
:
15 Jul 13 (Deposition) - 31 Jul 13 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.32
Chains
:
Asym. Unit : A,V
Biol. Unit 1: A,V (1x)
Keywords
:
Blood Clotting, Blood Coagulation, Prothrombinase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. C. Lechtenberg, T. A. Murray-Rust, D. J. Johnson, T. E. Adams, S. Krishnaswamy, R. M. Camire, J. A. Huntington
Crystal Structure Of The Prothrombinase Complex From The Venom Of Pseudonaja Textilis.
Blood V. 122 2777 2013
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Hetero Components
(6, 18)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: COPPER (II) ION (CUa)
4a: ALPHA-L-FUCOSE (FUCa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
CU
1
Ligand/Ion
COPPER (II) ION
4
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
5
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS V:94 , GLU V:109 , ASP V:112 , ASP V:113
BINDING SITE FOR RESIDUE CA V2430
2
AC2
SOFTWARE
LYS V:890 , PHE V:905 , ASP V:908 , ASP V:909 , HOH V:2080
BINDING SITE FOR RESIDUE CA V2431
3
AC3
SOFTWARE
HIS V:148 , HIS V:1055 , GLU V:1095 , GLU V:1097
BINDING SITE FOR RESIDUE CU V2432
4
AC4
SOFTWARE
ASN V:126
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG V1515 THROUGH NAG V1516 BOUND TO ASN V 126
5
AC5
SOFTWARE
ASP V:192 , SER V:202 , LEU V:203 , GLN V:204 , TYR V:205 , ALA V:211 , ASN V:212 , SER V:236 , LYS V:287 , GLN V:290 , ALA V:291 , ASP V:592 , HOH V:2037 , HOH V:2069
BINDING SITE FOR POLY-SACCHARIDE RESIDUES MAN V1501 THROUGH MAN V1514 BOUND TO ASN V 212
6
AC6
SOFTWARE
ASN V:376
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG V1432 THROUGH FUC V1433 BOUND TO ASN V 376
7
AC7
SOFTWARE
ASN V:914 , HOH V:2104
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG V1519 THROUGH NAG V1520 BOUND TO ASN V 914
8
AC8
SOFTWARE
ASN V:1150
BINDING SITE FOR MONO-SACCHARIDE NAG V1521 BOUND TO ASN V1150
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (V:277-297|V:632-652|V:1090-1110)
2: FA58C_3 (V:1117-1268|V:1273-1427)
3: FA58C_1 (V:1157-1187|V:1317-1346)
4: FA58C_2 (V:1411-1427)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
FA5V_PSETE
307-327
662-682
1120-1140
3
V:277-297
V:632-652
V:1090-1110
2
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
FA5V_PSETE
1147-1298
1303-1457
2
V:1117-1268
V:1273-1427
3
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
FA5V_PSETE
1187-1217
1347-1376
2
V:1157-1187
V:1317-1346
4
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
FA5V_PSETE
1441-1457
1
V:1411-1427
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (249 KB)
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