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Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE AIMP3-MRS N-TERMINAL DOMAIN COMPLEX WITH I3C
Authors
:
H. Y. Cho, W. W. Seo, H. J. Cho, B. S. Kang
Date
:
29 Jun 13 (Deposition) - 16 Jul 14 (Release) - 16 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Ligase, Mrs
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Y. Cho, S. J. Maeng, H. J. Cho, Y. S. Choi, J. M. Chung, S. Lee, H. K. Kim, J. H. Kim, C. Eom, Y. Kim, M. Guo, H. S. Jung, B. S. Kang, S. Kim
Assembly Of Multi-Trna Synthetase Complex Via Heterotetrameric Glutathione Transferase-Homology Domains.
J. Biol. Chem. V. 290 29313 2015
[
close entry info
]
Hetero Components
(1, 3)
Info
All Hetero Components
1a: 5-AMINO-2,4,6-TRIIODOBENZENE-1,3-D... (I3Ca)
1b: 5-AMINO-2,4,6-TRIIODOBENZENE-1,3-D... (I3Cb)
1c: 5-AMINO-2,4,6-TRIIODOBENZENE-1,3-D... (I3Cc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
I3C
3
Ligand/Ion
5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC ACID
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:160 , HOH A:2073 , LEU B:140 , ARG B:144 , CYS B:147 , HIS B:148 , LYS B:166 , ARG B:168 , HOH B:2093
BINDING SITE FOR RESIDUE I3C B1169
2
AC2
SOFTWARE
ARG A:2 , SER A:31 , LYS A:191 , GLN A:192 , LYS B:12 , GLN B:157
BINDING SITE FOR RESIDUE I3C A1204
3
AC3
SOFTWARE
ARG A:25 , LEU A:71 , HOH A:2084 , HOH A:2085 , ASN B:36 , THR B:64 , ALA B:65
BINDING SITE FOR RESIDUE I3C A1205
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_077848 (V5M, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_077848
V
5
M
SYMC_HUMAN
Unclassified
587777227
A
V
5
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (B:50-168,A:74-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
MCA3_HUMAN
50-173
1
B:50-168
SYMC_HUMAN
74-198
1
A:74-198
[
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Exons
(6, 6)
Info
All Exons
Exon 1.1a (A:1-37)
Exon 1.2 (A:37-67)
Exon 1.3 (A:67-93)
Exon 1.4 (A:94-138)
Exon 1.5 (A:139-164)
Exon 1.6 (A:164-203)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262027
1a
ENSE00001341718
chr12:
57881851-57881982
132
SYMC_HUMAN
1-37
37
1
A:1-37
37
1.2
ENST00000262027
2
ENSE00001274042
chr12:
57882802-57882892
91
SYMC_HUMAN
37-67
31
1
A:37-67
31
1.3
ENST00000262027
3
ENSE00001273905
chr12:
57883050-57883128
79
SYMC_HUMAN
67-93
27
1
A:67-93
27
1.4
ENST00000262027
4
ENSE00001274065
chr12:
57883207-57883341
135
SYMC_HUMAN
94-138
45
1
A:94-138
45
1.5
ENST00000262027
5
ENSE00001273978
chr12:
57883679-57883754
76
SYMC_HUMAN
139-164
26
1
A:139-164
26
1.6
ENST00000262027
6
ENSE00001273945
chr12:
57883990-57884162
173
SYMC_HUMAN
164-221
58
1
A:164-203
40
1.7b
ENST00000262027
7b
ENSE00001273888
chr12:
57884321-57884427
107
SYMC_HUMAN
222-257
36
0
-
-
1.8
ENST00000262027
8
ENSE00001108429
chr12:
57891940-57892056
117
SYMC_HUMAN
257-296
40
0
-
-
1.9
ENST00000262027
9
ENSE00001024050
chr12:
57892203-57892406
204
SYMC_HUMAN
296-364
69
0
-
-
1.10
ENST00000262027
10
ENSE00001024092
chr12:
57894104-57894305
202
SYMC_HUMAN
364-431
68
0
-
-
1.11
ENST00000262027
11
ENSE00001024045
chr12:
57898008-57898082
75
SYMC_HUMAN
432-456
25
0
-
-
1.12
ENST00000262027
12
ENSE00001273848
chr12:
57905481-57905651
171
SYMC_HUMAN
457-513
57
0
-
-
1.13a
ENST00000262027
13a
ENSE00001024125
chr12:
57905791-57905886
96
SYMC_HUMAN
514-545
32
0
-
-
1.14
ENST00000262027
14
ENSE00001024043
chr12:
57906019-57906136
118
SYMC_HUMAN
546-585
40
0
-
-
1.15a
ENST00000262027
15a
ENSE00001273818
chr12:
57906534-57906747
214
SYMC_HUMAN
585-656
72
0
-
-
1.16
ENST00000262027
16
ENSE00001273812
chr12:
57908503-57908634
132
SYMC_HUMAN
656-700
45
0
-
-
1.17
ENST00000262027
17
ENSE00001139685
chr12:
57908737-57908841
105
SYMC_HUMAN
700-735
36
0
-
-
1.18
ENST00000262027
18
ENSE00001139676
chr12:
57908933-57909119
187
SYMC_HUMAN
735-797
63
0
-
-
1.19
ENST00000262027
19
ENSE00001139670
chr12:
57909703-57909774
72
SYMC_HUMAN
798-821
24
0
-
-
1.20
ENST00000262027
20
ENSE00001273921
chr12:
57910028-57910120
93
SYMC_HUMAN
822-852
31
0
-
-
1.21
ENST00000262027
21
ENSE00001274018
chr12:
57910218-57910433
216
SYMC_HUMAN
853-900
48
0
-
-
[
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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