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4BVF
Asym. Unit
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Asym.Unit (54 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (4 KB)
Biol.Unit 3 (49 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THIOALKYLIMIDATE FORMED FROM THIO-ACETYL-LYSINE ACS2-PEPTIDE CRYSTALLIZED IN PRESENCE OF THE INHIBITOR EX-527
Authors
:
M. Gertz, M. Weyand, C. Steegborn
Date
:
25 Jun 13 (Deposition) - 17 Jul 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Hydrolase-Ligase Complex, Thio-Intermediate, Hydrolase-Hydrolase
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Reference
:
M. Gertz, F. Fischer, G. T. T. Nguyen, M. Lakshminarasimhan, M. Schutkowski, M. Weyand, C. Steegborn
Ex-527 Inhibits Sirtuins By Exploiting Their Unique Nad+-Dependent Deacetylation Mechanism
Proc. Natl. Acad. Sci. Usa V. 110 E2772 2013
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: (2S)-2-AMINO-6-{[(1Z)-1-{[(2R,3R,4... (FZNa)
3a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
FZN
1
Mod. Amino Acid
(2S)-2-AMINO-6-{[(1Z)-1-{[(2R,3R,4S,5R)-5-({[(R)-{[(R)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]SULFANYL}ETHYLIDENE]AMINO}HEXANOIC ACID
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:256 , CYS A:259 , CYS A:280 , CYS A:283
BINDING SITE FOR RESIDUE ZN A1396
2
AC2
SOFTWARE
ARG A:135 , ALA A:136 , GLN A:138 , LYS A:219 , GLU A:382
BINDING SITE FOR RESIDUE EDO A1397
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051978 (V208I, chain A, )
2: VAR_051979 (G369S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051978
V
208
I
SIR3_HUMAN
Polymorphism
11246020
A
V
208
I
2
UniProt
VAR_051979
G
369
S
SIR3_HUMAN
Polymorphism
3020901
A
G
369
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:126-382)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR3_HUMAN
126-382
1
A:126-382
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Exons
(0, 0)
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Asym.Unit (54 KB)
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