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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
4BUZ
Asym. Unit
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Asym.Unit (95 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
SIR2 COMPLEX STRUCTURE MIXTURE OF EX-527 INHIBITOR AND REACTION PRODUCTS OR OF REACTION SUBSTRATES P53 PEPTIDE AND NAD
Authors
:
M. Weyand, M. Lakshminarasimhan, M. Gertz, C. Steegborn
Date
:
24 Jun 13 (Deposition) - 17 Jul 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,P
Biol. Unit 1: A,P (1x)
Keywords
:
Hydrolase, Nad-Dependent Deacetylase, Sirtuin, Inhibitor Complex, Ex-527, Running Reaction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Gertz, F. Fischer, G. T. T. Nguyen, M. Lakshminarasimhan, M. Schutkowski, M. Weyand, C. Steegborn
Ex-527 Inhibits Sirtuins By Exploiting Their Unique Nad+-Dependent Deacetylation Mechanism
Proc. Natl. Acad. Sci. Usa V. 110 E2772 2013
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Hetero Components
(6, 6)
Info
All Hetero Components
1a: N(6)-ACETYLLYSINE (ALYa)
2a: 1,2-ETHANEDIOL (EDOa)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
4a: 2'-O-ACETYL ADENOSINE-5-DIPHOSPHOR... (OADa)
5a: (1S)-6-CHLORO-2,3,4,9-TETRAHYDRO-1... (OCZa)
6a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALY
1
Mod. Amino Acid
N(6)-ACETYLLYSINE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
4
OAD
1
Ligand/Ion
2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE
5
OCZ
1
Ligand/Ion
(1S)-6-CHLORO-2,3,4,9-TETRAHYDRO-1H-CARBAZOLE-1-CARBOXAMIDE
6
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:31 , PHE A:33 , PHE A:48 , MET A:71 , GLN A:98 , ASN A:99 , ILE A:100 , ASP A:101 , ILE A:159 , VAL A:160 , HOH A:2020 , HOH A:2021 , ALY P:382
BINDING SITE FOR RESIDUE OCZ A1247
2
AC2
SOFTWARE
GLY A:21 , ALA A:22 , GLY A:23 , THR A:26 , PRO A:27 , ILE A:30 , PRO A:31 , ASP A:32 , PHE A:33 , GLN A:98 , ASN A:99 , ILE A:100 , ASP A:101 , HIS A:116 , GLY A:188 , SER A:189 , SER A:190 , ASN A:214 , LEU A:215 , MET A:230 , ASP A:231 , VAL A:232 , HOH A:2020 , HOH A:2021 , HOH A:2161 , HOH A:2196 , HOH A:2197 , ALY P:382
BINDING SITE FOR RESIDUE NAD A1248
3
AC3
SOFTWARE
GLY A:21 , ALA A:22 , GLY A:23 , THR A:26 , PRO A:27 , ASP A:32 , PHE A:33 , PHE A:48 , HIS A:116 , VAL A:160 , PHE A:162 , GLY A:188 , SER A:189 , SER A:190 , VAL A:193 , ASN A:214 , LEU A:215 , MET A:230 , ASP A:231 , VAL A:232 , HOH A:2020 , HOH A:2161 , HOH A:2196 , HOH A:2197 , ALY P:382
BINDING SITE FOR RESIDUE OAD A1249
4
AC4
SOFTWARE
CYS A:124 , CYS A:127 , CYS A:148 , CYS A:151
BINDING SITE FOR RESIDUE ZN A1250
5
AC5
SOFTWARE
TYR A:123 , LYS A:130 , HOH A:2107 , HOH A:2114
BINDING SITE FOR RESIDUE EDO A1251
[
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_045572 (R379H, chain P, )
2: VAR_045573 (F385L, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045572
R
379
H
P53_HUMAN
Unclassified
---
P
R
379
H
2
UniProt
VAR_045573
F
385
L
P53_HUMAN
Unclassified
---
P
F
385
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:4-246)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
NPD_THEMA
4-246
1
A:4-246
[
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Exons
(1, 1)
Info
All Exons
Exon 1.12d (P:379-385)
View:
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Label:
All Exon Boundaries
1: Boundary 1.11/1.12d
2: Boundary 1.12d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000269305
1a
ENSE00001146308
chr17:
7590856-7590695
162
P53_HUMAN
-
0
0
-
-
1.3a
ENST00000269305
3a
ENSE00002194362
chr17:
7579940-7579839
102
P53_HUMAN
1-25
25
0
-
-
1.3d
ENST00000269305
3d
ENSE00001710434
chr17:
7579721-7579700
22
P53_HUMAN
25-32
8
0
-
-
1.4b
ENST00000269305
4b
ENSE00001718735
chr17:
7579590-7579312
279
P53_HUMAN
33-125
93
0
-
-
1.5d
ENST00000269305
5d
ENSE00001255919
chr17:
7578554-7578371
184
P53_HUMAN
126-187
62
0
-
-
1.6a
ENST00000269305
6a
ENSE00001255912
chr17:
7578289-7578177
113
P53_HUMAN
187-224
38
0
-
-
1.7b
ENST00000269305
7b
ENSE00001665758
chr17:
7577608-7577499
110
P53_HUMAN
225-261
37
0
-
-
1.8
ENST00000269305
8
ENSE00001789298
chr17:
7577155-7577019
137
P53_HUMAN
261-307
47
0
-
-
1.9
ENST00000269305
9
ENSE00002149110
chr17:
7576926-7576853
74
P53_HUMAN
307-331
25
0
-
-
1.11
ENST00000269305
11
ENSE00001728015
chr17:
7574033-7573927
107
P53_HUMAN
332-367
36
0
-
-
1.12d
ENST00000269305
12d
ENSE00001757276
chr17:
7573008-7571720
1289
P53_HUMAN
367-393
27
1
P:379-385
7
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain P
Asymmetric Unit 1
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Asym.Unit (95 KB)
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