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4BUC
Asym. Unit
Info
Asym.Unit (307 KB)
Biol.Unit 1 (152 KB)
Biol.Unit 2 (150 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MURD LIGASE FROM THERMOTOGA MARITIMA IN APO FORM
Authors
:
S. Favini-Stabile, C. Contreras-Martel, N. Thielens, A. Dessen
Date
:
20 Jun 13 (Deposition) - 17 Jul 13 (Release) - 18 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.17
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ligase, Peptidoglycan Synthesis, Adp-Forming Enzyme, Cell Wall, Cell Shape, Cell Cycle, Nucleotide-Binding, Atp-Binding, Cell Division
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Favini-Stabile, C. Contreras-Martel, N. Thielens, A. Dessen
Mreb And Murg As Scaffolds For The Cytoplasmic Steps Of Peptidoglycan Biosynthesis
Environ. Microbiol. V. 15 3218 2013
[
close entry info
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Hetero Components
(6, 56)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
4a: AMMONIUM ION (NH4a)
4b: AMMONIUM ION (NH4b)
5a: PHOSPHITE ION (PO3a)
5b: PHOSPHITE ION (PO3b)
6a: PHOSPHATE ION (PO4a)
6b: PHOSPHATE ION (PO4b)
6c: PHOSPHATE ION (PO4c)
6d: PHOSPHATE ION (PO4d)
6e: PHOSPHATE ION (PO4e)
6f: PHOSPHATE ION (PO4f)
6g: PHOSPHATE ION (PO4g)
6h: PHOSPHATE ION (PO4h)
6i: PHOSPHATE ION (PO4i)
6j: PHOSPHATE ION (PO4j)
6k: PHOSPHATE ION (PO4k)
6l: PHOSPHATE ION (PO4l)
6m: PHOSPHATE ION (PO4m)
6n: PHOSPHATE ION (PO4n)
6o: PHOSPHATE ION (PO4o)
6p: PHOSPHATE ION (PO4p)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
6
Ligand/Ion
CHLORIDE ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
4
NH4
2
Ligand/Ion
AMMONIUM ION
5
PO3
2
Ligand/Ion
PHOSPHITE ION
6
PO4
16
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:133 , SER A:177 , SER A:178 , PHE A:179 , ASP A:203 , TYR A:211 , LYS A:215
BINDING SITE FOR RESIDUE PO4 A1000
02
AC2
SOFTWARE
GLY A:132 , THR A:135 , MSE A:279 , ASN A:282 , GOL A:1202
BINDING SITE FOR RESIDUE PO4 A1001
03
AC3
SOFTWARE
ASN A:196 , ASN A:231 , HIS A:233 , TYR A:277 , GLU A:281 , HOH A:2093 , HOH A:2094
BINDING SITE FOR RESIDUE PO4 A1002
04
AC4
SOFTWARE
ASP A:120 , LYS A:123 , GLU A:168 , HOH A:2056 , HOH A:2084 , HOH A:2169
BINDING SITE FOR RESIDUE PO4 A1003
05
AC5
SOFTWARE
LYS A:30 , SER A:31 , SER A:88 , PRO A:89 , NH4 A:1501 , HOH A:2001 , HOH A:2003
BINDING SITE FOR RESIDUE PO4 A1004
06
AC6
SOFTWARE
ASP A:213 , ARG A:238 , GLU A:404 , MSE A:407 , HIS A:445 , HOH A:2160 , HOH A:2166
BINDING SITE FOR RESIDUE PO4 A1005
07
AC7
SOFTWARE
TYR A:86 , LYS A:107 , SER A:109 , PHE A:114 , ASP A:117 , GLU A:185
BINDING SITE FOR RESIDUE PO4 A1006
08
AC8
SOFTWARE
ALA A:52 , HIS A:75 , ILE A:91 , PO3 A:1008 , CL A:1402 , HOH A:2040 , ALA B:52 , GLY B:73 , GLY B:74 , HOH B:2017
BINDING SITE FOR RESIDUE PO4 A1007
09
AC9
SOFTWARE
SER A:96 , MSE A:97 , PO4 A:1007 , HOH A:2040 , GLY B:74 , HIS B:75 , SER B:96 , PO3 B:1008
BINDING SITE FOR RESIDUE PO3 A1008
10
BC1
SOFTWARE
PHE A:182 , TRP A:183 , ILE A:395 , GLU A:397 , GLU A:401 , HOH A:2043
BINDING SITE FOR RESIDUE GOL A1200
11
BC2
SOFTWARE
ARG A:33 , LYS A:37 , PHE A:62
BINDING SITE FOR RESIDUE GOL A1201
12
BC3
SOFTWARE
GLY A:132 , LYS A:133 , SER A:134 , THR A:135 , PO4 A:1001
BINDING SITE FOR RESIDUE GOL A1202
13
BC4
SOFTWARE
GLU A:111 , GLY A:155 , ALA A:161 , GLN A:180 , HOH A:2004
BINDING SITE FOR RESIDUE CL A1400
14
BC5
SOFTWARE
PHE A:28 , GLU A:51 , LYS A:53
BINDING SITE FOR RESIDUE CL A1401
15
BC6
SOFTWARE
GLY A:27 , GLU A:51 , ALA A:52 , HIS A:75 , PO4 A:1007
BINDING SITE FOR RESIDUE CL A1402
16
BC7
SOFTWARE
PO4 A:1004
BINDING SITE FOR RESIDUE NH4 A1501
17
BC8
SOFTWARE
LYS B:133 , SER B:177 , SER B:178 , PHE B:179 , ASP B:203 , TYR B:211 , LYS B:215 , HOH B:2031
BINDING SITE FOR RESIDUE PO4 B1000
18
BC9
SOFTWARE
GLY B:132 , THR B:135 , GLN B:278 , MSE B:279 , ASN B:282 , GOL B:1202
BINDING SITE FOR RESIDUE PO4 B1001
19
CC1
SOFTWARE
ASN B:196 , ASN B:231 , HIS B:233 , TYR B:277 , GLU B:281 , HOH B:2046 , HOH B:2047
BINDING SITE FOR RESIDUE PO4 B1002
20
CC2
SOFTWARE
ASP B:120 , LYS B:123 , GLU B:168 , HOH B:2024
BINDING SITE FOR RESIDUE PO4 B1003
21
CC3
SOFTWARE
LYS B:30 , SER B:31 , PRO B:89 , NH4 B:1501 , HOH B:2001 , HOH B:2002
BINDING SITE FOR RESIDUE PO4 B1004
22
CC4
SOFTWARE
ASP B:213 , ARG B:238 , GLU B:404 , MSE B:407 , HIS B:445 , HOH B:2057 , HOH B:2084
BINDING SITE FOR RESIDUE PO4 B1005
23
CC5
SOFTWARE
TYR B:86 , LYS B:107 , SER B:109 , PHE B:114 , ASP B:117 , GLU B:185
BINDING SITE FOR RESIDUE PO4 B1006
24
CC6
SOFTWARE
ALA A:52 , GLY A:73 , GLY A:74 , HOH A:2034 , ALA B:52 , HIS B:75 , ILE B:91 , PO3 B:1008 , CL B:1402 , HOH B:2020
BINDING SITE FOR RESIDUE PO4 B1007
25
CC7
SOFTWARE
GLY A:74 , HIS A:75 , SER A:96 , PO3 A:1008 , THR B:95 , SER B:96 , MSE B:97 , PO4 B:1007 , HOH B:2020
BINDING SITE FOR RESIDUE PO3 B1008
26
CC8
SOFTWARE
PHE B:182 , TRP B:183 , GLU B:397 , GLU B:401 , HOH B:2022
BINDING SITE FOR RESIDUE GOL B1200
27
CC9
SOFTWARE
ARG B:33 , LYS B:37 , GLU B:58 , PHE B:62
BINDING SITE FOR RESIDUE GOL B1201
28
DC1
SOFTWARE
GLY B:132 , LYS B:133 , SER B:134 , THR B:135 , PO4 B:1001
BINDING SITE FOR RESIDUE GOL B1202
29
DC2
SOFTWARE
GLU B:111 , GLY B:155 , PRO B:160 , ALA B:161 , GLN B:180
BINDING SITE FOR RESIDUE CL B1400
30
DC3
SOFTWARE
PHE B:28 , GLU B:51
BINDING SITE FOR RESIDUE CL B1401
31
DC4
SOFTWARE
GLY B:27 , GLU B:51 , ALA B:52 , HIS B:75 , PO4 B:1007
BINDING SITE FOR RESIDUE CL B1402
32
DC5
SOFTWARE
PO4 B:1004
BINDING SITE FOR RESIDUE NH4 B1501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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