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4BSS
Biol. Unit 2
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Asym.Unit (779 KB)
Biol.Unit 1 (382 KB)
Biol.Unit 2 (385 KB)
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(1)
Title
:
STRUCTURE OF THE ECTODOMAIN OF LGR5 IN COMPLEX WITH R-SPONDIN-1 (FU1FU2) IN P21 CRYSTAL FORM
Authors
:
W. C. Peng, W. De Lau, F. Forneris, J. C. M. Granneman, M. Huch, H. Clever
Date
:
11 Jun 13 (Deposition) - 19 Jun 13 (Release) - 24 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Signaling Protein, Adult Stem Cell, Leucine-Rich Repeat G-Protein Coupled Receptor, Leucine-Rich Repeat, Furin Domain, Wnt Signaling, Congenital Anonychia
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. C. Peng, W. De Lau, F. Forneris, J. C. M. Granneman, M. Huch, H. Clevers, P. Gros
Structure Of Stem Cell Growth Factor R-Spondin 1 In Complex With The Ectodomain Of Its Receptor Lgr5.
Cell Rep. V. 3 1885 2013
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(3, 3)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
THR E:36 , LEU E:57 , GLU E:59 , PRO E:61 , ASN E:63
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E1063 THROUGH NAG E1064 BOUND TO ASN E 63
2
AC7
SOFTWARE
SER E:58 , ASN E:77 , SER E:79
BINDING SITE FOR MONO-SACCHARIDE NAG E1077 BOUND TO ASN E 77
3
AC8
SOFTWARE
GLY F:56 , ASN F:77
BINDING SITE FOR MONO-SACCHARIDE NAG F1077 BOUND TO ASN F 77
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_049411 (H383R, chain E/F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049411
H
383
R
LGR5_HUMAN
Polymorphism
12303775
E/F
H
383
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 30)
Info
All PROSITE Patterns/Profiles
1: LRR (E:67-90,E:91-112,E:115-136,E:139-1...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
LGR5_HUMAN
67-90
91-112
115-136
139-160
163-184
187-208
211-232
235-256
258-279
306-328
329-350
353-374
375-396
399-420
423-446
30
-
-
E:67-90
F:67-90
-
-
E:91-112
F:91-112
-
-
E:115-136
F:115-136
-
-
E:139-160
F:139-160
-
-
E:163-184
F:163-184
-
-
E:187-208
F:187-208
-
-
E:211-232
F:211-232
-
-
E:235-256
F:235-256
-
-
E:258-279
F:258-279
-
-
E:306-328
F:306-328
-
-
E:329-350
F:329-350
-
-
E:353-374
F:353-374
-
-
E:375-396
F:375-396
-
-
E:399-420
F:399-420
-
-
E:423-446
F:423-446
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (779 KB)
Header - Asym.Unit
Biol.Unit 1 (382 KB)
Header - Biol.Unit 1
Biol.Unit 2 (385 KB)
Header - Biol.Unit 2
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