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4BSG
Biol. Unit 1
Info
Asym.Unit (179 KB)
Biol.Unit 1 (505 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN H7N3 AVIAN INFLUENZA VIRUS HAEMAGGLUTININ
Authors
:
X. Xiong, L. F. Haire, S. R. Martin, S. A. Wharton, R. S. Daniels, M. S. Ben J. W. Mccauley, P. J. Collins, P. A. Walker, J. J. Skehel, S. J. Gamblin
Date
:
10 Jun 13 (Deposition) - 03 Jul 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Viral Protein, H7N9, H5N1, Fowl Plague Virus, Sialic Acid, Glycoprotein, Glycosylation, Virus Receptor, Bird Flu, Sialyllactosamine, 3Sln, 6Sln, Lstc, Pandemic
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
X. Xiong, S. R. Martin, L. F. Haire, S. A. Wharton, R. S. Daniels, M. S. Bennett, J. W. Mccauley, P. J. Collins, P. A. Walker, J. J. Skehel, S. J. Gamblin
Receptor Binding By An H7N9 Influenza Virus From Humans
Nature V. 499 496 2013
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Hetero Components
(2, 51)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
SO4
39
Ligand/Ion
SULFATE ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:118 , GLY A:119 , ILE A:120 , ASN A:146
BINDING SITE FOR RESIDUE SO4 A1317
02
AC2
SOFTWARE
ASN A:37 , PRO A:39 , HOH A:2029 , HOH A:2191
BINDING SITE FOR RESIDUE SO4 A1318
03
AC3
SOFTWARE
ARG A:35 , HOH A:2024 , HOH A:2229
BINDING SITE FOR RESIDUE SO4 A1319
04
AC4
SOFTWARE
TRP B:14 , GLU B:15 , GLY B:16 , ARG B:25
BINDING SITE FOR RESIDUE SO4 B1171
05
AC5
SOFTWARE
ASN A:199 , ASN A:229 , THR B:71 , GLU B:72 , HOH B:2025 , HOH B:2027
BINDING SITE FOR RESIDUE SO4 B1172
06
AC6
SOFTWARE
VAL A:38 , PRO A:39 , ARG A:40
BINDING SITE FOR RESIDUE SO4 A1320
07
AC7
SOFTWARE
SER A:84 , ASP A:85
BINDING SITE FOR RESIDUE SO4 A1321
08
AC8
SOFTWARE
ARG A:163 , LYS A:164 , HOH A:2133
BINDING SITE FOR RESIDUE SO4 A1322
09
AC9
SOFTWARE
LYS A:110 , GLU A:111 , THR A:112 , ARG A:247
BINDING SITE FOR RESIDUE SO4 A1323
10
BC1
SOFTWARE
ASN A:94 , GLU A:95 , HOH A:2076 , HOH A:2084
BINDING SITE FOR RESIDUE SO4 A1324
11
BC2
SOFTWARE
THR A:20 , GLU A:21 , ARG A:22
BINDING SITE FOR RESIDUE SO4 A1325
12
BC3
SOFTWARE
GLN A:302 , THR B:59 , SER B:93 , TYR B:94 , HOH B:2067
BINDING SITE FOR RESIDUE SO4 B1173
13
BC4
SOFTWARE
THR A:126 , SER A:127 , GLN A:217
BINDING SITE FOR RESIDUE SO4 A1326
14
BC5
SOFTWARE
ASN A:28 , ALA A:29 , THR A:30 , HOH A:2017 , HOH A:2224 , HOH A:2225
BINDING SITE FOR MONO-SACCHARIDE NAG A 403 BOUND TO ASN A 28
15
BC6
SOFTWARE
ASN A:231
BINDING SITE FOR MONO-SACCHARIDE NAG A 404 BOUND TO ASN A 231
16
BC7
SOFTWARE
ARG A:291 , GLU B:72 , LYS B:75 , ASN B:79 , ASN B:82 , HOH B:2029 , HOH B:2064 , HOH B:2065 , HOH B:2066
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 201 THROUGH NAG B 202 BOUND TO ASN B 82
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4bsga_ (A:)
2a: SCOP_d4bsgb_ (B:)
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Classes
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Protein Domains
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(
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Organisms
(
)
(
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Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Influenza a (virus a/turkey/italy/214845/2002 (h7n3)) [TaxId: 265120]
(1)
1a
d4bsga_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza a virus (a/turkey/italy/214845/2002 (h7n3)) [TaxId: 265120]
(1)
2a
d4bsgb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (505 KB)
Header - Biol.Unit 1
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