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4BSE
Asym. Unit
Info
Asym.Unit (179 KB)
Biol.Unit 1 (501 KB)
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(1)
Title
:
HUMAN H7N9 INFLUENZA VIRUS HAEMAGGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE LSTC
Authors
:
X. Xiong, L. F. Haire, S. R. Martin, S. A. Wharton, R. S. Daniels, M. S. Ben J. W. Mccauley, P. J. Collins, P. A. Walker, J. J. Skehel, S. J. Gamblin
Date
:
10 Jun 13 (Deposition) - 03 Jul 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Viral Protein, H7N3, H7N9, H5N1, Fowl Plague Virus, Glycoprotein, Virus Receptor, Bird Flu, Sialyllactosamine, Lstc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Xiong, S. R. Martin, L. F. Haire, S. A. Wharton, R. S. Daniels, M. S. Bennett, J. W. Mccauley, P. J. Collins, P. A. Walker, J. J. Skehel, S. J. Gamblin
Receptor Binding By An H7N9 Influenza Virus From Humans
Nature V. 499 496 2013
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3a: O-SIALIC ACID (SIAa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
1
Ligand/Ion
O-SIALIC ACID
4
SO4
15
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:117 , SER A:118 , GLY A:119 , ILE A:120 , ASN A:146
BINDING SITE FOR RESIDUE SO4 A1323
02
AC2
SOFTWARE
ASN A:37
BINDING SITE FOR RESIDUE SO4 A1324
03
AC3
SOFTWARE
ARG A:35 , ARG A:303
BINDING SITE FOR RESIDUE SO4 A1325
04
AC4
SOFTWARE
TRP B:14 , GLU B:15 , GLY B:16 , ARG B:25
BINDING SITE FOR RESIDUE SO4 B1173
05
AC5
SOFTWARE
ASN A:199 , ASN A:229 , ASN B:71 , GLU B:72
BINDING SITE FOR RESIDUE SO4 B1174
06
AC6
SOFTWARE
PRO A:39 , ARG A:40
BINDING SITE FOR RESIDUE SO4 A1326
07
AC7
SOFTWARE
SER A:84 , ASP A:85 , VAL A:86
BINDING SITE FOR RESIDUE SO4 A1327
08
AC8
SOFTWARE
ARG A:163 , LYS A:164 , SER A:165
BINDING SITE FOR RESIDUE SO4 A1328
09
AC9
SOFTWARE
LYS A:110 , GLU A:111 , ALA A:112 , ARG A:247
BINDING SITE FOR RESIDUE SO4 A1329
10
BC1
SOFTWARE
PHE A:92 , ASN A:94 , GLU A:95 , HOH A:2023 , HOH A:2024
BINDING SITE FOR RESIDUE SO4 A1330
11
BC2
SOFTWARE
THR A:20 , GLU A:21 , ARG A:22
BINDING SITE FOR RESIDUE SO4 A1331
12
BC3
SOFTWARE
GLN A:302 , GLU B:57 , THR B:59 , TYR B:94 , GLU B:97
BINDING SITE FOR RESIDUE SO4 B1175
13
BC4
SOFTWARE
LYS B:123 , GLU B:132
BINDING SITE FOR RESIDUE SO4 B1176
14
BC5
SOFTWARE
SER A:73 , ARG A:252
BINDING SITE FOR RESIDUE SO4 A1332
15
BC6
SOFTWARE
GLN A:302 , ARG A:303 , SER A:304
BINDING SITE FOR RESIDUE SO4 A1333
16
BC7
SOFTWARE
ASN A:12 , GLY A:13
BINDING SITE FOR MONO-SACCHARIDE NAG A1319 BOUND TO ASN A 12
17
BC8
SOFTWARE
ASN A:28 , ALA A:29 , THR A:30 , HOH A:2005
BINDING SITE FOR MONO-SACCHARIDE NAG A1317 BOUND TO ASN A 28
18
BC9
SOFTWARE
ASN A:231
BINDING SITE FOR MONO-SACCHARIDE NAG A1318 BOUND TO ASN A 231
19
CC1
SOFTWARE
HOH A:2054 , GLU B:72 , LYS B:75 , ASN B:79 , ASN B:82 , HOH B:2011
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1171 THROUGH NAG B1172 BOUND TO ASN B 82
20
CC2
SOFTWARE
TYR A:88 , ALA A:125 , THR A:126 , SER A:127 , HIS A:174 , VAL A:177 , LEU A:185 , HOH A:2036
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A1320 THROUGH NAG A1322
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4bsea_ (A:)
2a: SCOP_d4bseb_ (B:)
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Classes
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
automated matches
(37)
Protein domain
:
automated matches
(37)
Influenza virus a/anhui/1/2013 (h7n9) [TaxId: 11320]
(6)
1a
d4bsea_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
automated matches
(11)
Protein domain
:
automated matches
(11)
Influenza virus a/anhui/1/2013 (h7n9) [TaxId: 11320]
(6)
2a
d4bseb_
B:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (501 KB)
Header - Biol.Unit 1
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