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4BS2
Asym. Unit
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Asym.Unit (1.2 MB)
Biol.Unit 1 (55 KB)
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Models
(20 )
Title
:
NMR STRUCTURE OF HUMAN TDP-43 TANDEM RRMS IN COMPLEX WITH UG-RICH RNA
Authors
:
P. J. Lukavsky, D. Daujotyte, J. R. Tollervey, J. Ule, C. Stuani, E. Bura F. E. Baralle, F. F. Damberger, F. H. T. Allain
Date
:
06 Jun 13 (Deposition) - 13 Nov 13 (Release) - 04 May 16 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription, Hnrnp, Cystic Fibrosis, Neurodegeneration, Isotope-Labelled Rna, Hammerhead Ribozyme
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. J. Lukavsky, D. Daujotyte, J. R. Tollervey, J. Ule, C. Stuani, E. Buratti, F. E. Baralle, F. F. Damberger, F. H. T. Allain
Molecular Basis Of Ug-Rich Rna Recognition By The Human Splicing Factor Tdp-43
Nat. Struct. Mol. Biol. V. 20 1443 2013
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_045657 (D169G, chain A, )
2: VAR_058611 (N267S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_045657
D
169
G
TADBP_HUMAN
Disease (ALS10)
80356717
A
D
169
G
2
UniProt
VAR_058611
N
267
S
TADBP_HUMAN
Disease (ALS10)
80356718
A
N
267
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:104-200|A:191-262)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
TADBP_HUMAN
104-200
191-262
2
A:104-200
A:191-262
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Exons
(4, 4)
Info
All Exons
Exon 1.6b (A:97-134)
Exon 1.7 (A:135-181)
Exon 1.8c (A:182-238)
Exon 1.9d (A:239-269)
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All Exon Boundaries
1: Boundary 1.3/1.6b
2: Boundary 1.6b/1.7
3: Boundary 1.7/1.8c
4: Boundary 1.8c/1.9d
5: Boundary 1.9d/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000240185
2b
ENSE00001945036
chr1:
11072699-11072800
102
TADBP_HUMAN
-
0
0
-
-
1.3
ENST00000240185
3
ENSE00002195623
chr1:
11073773-11074022
250
TADBP_HUMAN
1-80
80
0
-
-
1.6b
ENST00000240185
6b
ENSE00000743022
chr1:
11076901-11077064
164
TADBP_HUMAN
80-134
55
1
A:97-134
38
1.7
ENST00000240185
7
ENSE00000743024
chr1:
11078790-11078930
141
TADBP_HUMAN
135-181
47
1
A:135-181
47
1.8c
ENST00000240185
8c
ENSE00000743026
chr1:
11080486-11080656
171
TADBP_HUMAN
182-238
57
1
A:182-238
57
1.9d
ENST00000240185
9d
ENSE00001145815
chr1:
11082181-11084100
1920
TADBP_HUMAN
239-414
176
1
A:239-269
31
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Asym.Unit (1.2 MB)
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