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4BR5
Asym. Unit
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Asym.Unit (151 KB)
Biol.Unit 1 (144 KB)
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(1)
Title
:
RAT NTPDASE2 IN COMPLEX WITH ZN AMPPNP
Authors
:
M. Zebisch, P. Schaefer, P. Lauble, N. Straeter
Date
:
04 Jun 13 (Deposition) - 17 Jul 13 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Apyrase, Atpase, Adpase, Cd39, Purinergic Signalling, Domain Rotation, Transition State, Ntpdase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zebisch, M. Krauss, P. Schaefer, P. Lauble, N. Straeter
Crystallographic Snapshots Along The Reaction Pathway Of Nucleoside Triphosphate Diphosphohydrolases
Structure V. 21 1460 2013
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-ADENYL... (ANPa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
ANP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2
GOL
3
Ligand/Ion
GLYCEROL
3
ZN
1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:47 , SER A:48 , SER A:49 , HIS A:50 , THR A:122 , ALA A:123 , GLU A:165 , LEU A:202 , GLY A:203 , GLY A:204 , ALA A:205 , SER A:206 , ARG A:245 , ASP A:246 , SER A:346 , ALA A:347 , TYR A:350 , ARG A:394 , ZN A:1502 , HOH A:2056 , HOH A:2094 , HOH A:2095 , HOH A:2131 , HOH A:2161 , HOH A:2235 , HOH A:2256
BINDING SITE FOR RESIDUE ANP A1501
2
AC2
SOFTWARE
ANP A:1501 , HOH A:2004 , HOH A:2006 , HOH A:2095 , HOH A:2131
BINDING SITE FOR RESIDUE ZN A1502
3
AC3
SOFTWARE
ARG A:245 , ASP A:246 , LEU A:249 , ARG A:394 , ASP A:397 , HOH A:2160 , HOH A:2161 , HOH A:2257
BINDING SITE FOR RESIDUE GOL A1503
4
AC4
SOFTWARE
LEU A:250 , TRP A:266 , ASP A:397 , HOH A:2160 , HOH A:2164
BINDING SITE FOR RESIDUE GOL A1504
5
AC5
SOFTWARE
PHE A:168 , LEU A:228 , ASN A:443 , ILE A:448 , HOH A:2248 , HOH A:2250
BINDING SITE FOR RESIDUE GOL A1505
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GDA1_CD39_NTPASE (A:160-175)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GDA1_CD39_NTPASE
PS01238
GDA1/CD39 family of nucleoside phosphatases signature.
ENTP2_RAT
160-175
1
A:160-175
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4br5a1 (A:36-178)
2a: SCOP_d4br5a2 (A:179-461)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d4br5a1
A:36-178
Family
:
NTPDase (Nucleoside triphosphate diphosphohydrolase)-like
(10)
Protein domain
:
automated matches
(6)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
2a
d4br5a2
A:179-461
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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