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4BR0
Asym. Unit
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Asym.Unit (149 KB)
Biol.Unit 1 (142 KB)
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(1)
Title
:
RAT NTPDASE2 IN COMPLEX WITH CA AMPNP
Authors
:
M. Zebisch, P. Schaefer, P. Lauble, N. Straeter
Date
:
03 Jun 13 (Deposition) - 17 Jul 13 (Release) - 25 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Apyrase, Atpase, Adpase, Purinergic Signalling, Domain Rotation, Transition State, Ntpdase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Zebisch, M. Krauss, P. Schaefer, P. Lauble, N. Straeter
Crystallographic Snapshots Along The Reaction Pathway Of Nucleoside Triphosphate Diphosphohydrolases
Structure V. 21 1460 2013
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: 5'-O-[(R)-HYDROXY(PHOSPHONOAMINO)P... (AU1a)
2a: CALCIUM ION (CAa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AU1
1
Ligand/Ion
5'-O-[(R)-HYDROXY(PHOSPHONOAMINO)PHOSPHORYL]ADENOSINE
2
CA
1
Ligand/Ion
CALCIUM ION
3
GOL
5
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:47 , SER A:48 , SER A:49 , HIS A:50 , THR A:122 , ALA A:123 , GLU A:165 , GLY A:203 , GLY A:204 , ALA A:205 , SER A:206 , ARG A:245 , ASP A:246 , TYR A:350 , ARG A:394 , TYR A:398 , CA A:1463 , HOH A:2046 , HOH A:2069 , HOH A:2070 , HOH A:2121 , HOH A:2124
BINDING SITE FOR RESIDUE AU1 A1462
2
AC2
SOFTWARE
AU1 A:1462 , HOH A:2003 , HOH A:2005 , HOH A:2070 , HOH A:2101
BINDING SITE FOR RESIDUE CA A1463
3
AC3
SOFTWARE
ARG A:245 , ASP A:246 , ARG A:394 , ASP A:397 , GOL A:1465 , HOH A:2123 , HOH A:2188
BINDING SITE FOR RESIDUE GOL A1464
4
AC4
SOFTWARE
LEU A:249 , LEU A:253 , TRP A:266 , ASP A:397 , GOL A:1464 , HOH A:2123 , HOH A:2126
BINDING SITE FOR RESIDUE GOL A1465
5
AC5
SOFTWARE
PHE A:168 , LEU A:228 , ASN A:443 , HOH A:2113 , HOH A:2183 , HOH A:2189
BINDING SITE FOR RESIDUE GOL A1466
6
AC6
SOFTWARE
ARG A:251 , CYS A:284 , GLN A:288 , LEU A:317 , HOH A:2128
BINDING SITE FOR RESIDUE GOL A1467
7
AC7
SOFTWARE
LEU A:241 , CYS A:242 , HOH A:2141
BINDING SITE FOR RESIDUE GOL A1468
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GDA1_CD39_NTPASE (A:160-175)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GDA1_CD39_NTPASE
PS01238
GDA1/CD39 family of nucleoside phosphatases signature.
ENTP2_RAT
160-175
1
A:160-175
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4br0a1 (A:36-178)
2a: SCOP_d4br0a2 (A:179-462)
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)
Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d4br0a1
A:36-178
Family
:
NTPDase (Nucleoside triphosphate diphosphohydrolase)-like
(10)
Protein domain
:
automated matches
(6)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
2a
d4br0a2
A:179-462
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (149 KB)
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