PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
4BQP
Biol. Unit 3
Info
Asym.Unit (482 KB)
Biol.Unit 1 (308 KB)
Biol.Unit 2 (319 KB)
Biol.Unit 3 (321 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
MTB INHA COMPLEX WITH METHYL-THIAZOLE COMPOUND 7
Authors
:
J. A. Read, H. Gingell, P. Madhavapeddi, P. S. Shirude
Date
:
31 May 13 (Deposition) - 11 Dec 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D,E,F (1x)
Biol. Unit 3: C,D,E,F (1x)
Keywords
:
Oxidoreductase, Acp Enoyl Reductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Shirude, P. Madhavapeddi, M. Naik, K. Murugan, V. Shinde, R. Nandishaiah, J. Bhat, A. Kumar, S. Hameed, G. Holdgate, G. Davies, H. Mcmiken, N. Hegde, A. Ambady, J. Venkatraman, M. Panda, B. Bandodkar, V. K. Sambandamurthy, J. A. Read
Methyl-Thiazoles: A Novel Mode Of Inhibition With The Potential To Develop Novel Inhibitors Targeting Inha In Mycobacterium Tuberculosis.
J. Med. Chem. V. 56 8533 2013
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
2f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
1a: SODIUM ION (NAa)
3a: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYa)
3b: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYb)
3c: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYc)
3d: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYd)
3e: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYe)
3f: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
-1
Ligand/Ion
SODIUM ION
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
VMY
2
Ligand/Ion
(1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)-1H-PYRAZOL-3-YL]AMINO}-1,3,4-THIADIAZOL-2-YL)-1-(4-METHYL-1,3-THIAZOL-2-YL)ETHANOL
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
7: BC3 (SOFTWARE)
8: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY C:14 , ILE C:15 , ILE C:16 , SER C:20 , ILE C:21 , PHE C:41 , LEU C:63 , ASP C:64 , VAL C:65 , SER C:94 , ILE C:95 , GLY C:96 , ILE C:122 , MET C:147 , ASP C:148 , PHE C:149 , LYS C:165 , ALA C:191 , GLY C:192 , PRO C:193 , ILE C:194 , THR C:196 , VMY C:1271 , HOH C:2002 , HOH C:2003 , HOH C:2004 , HOH C:2025 , HOH C:2026 , HOH C:2035
BINDING SITE FOR RESIDUE NAD C1270
2
AC4
SOFTWARE
GLY F:14 , ILE F:15 , ILE F:16 , SER F:20 , ILE F:21 , PHE F:41 , LEU F:63 , ASP F:64 , VAL F:65 , SER F:94 , ILE F:95 , GLY F:96 , ILE F:122 , MET F:147 , ASP F:148 , PHE F:149 , MET F:161 , LYS F:165 , ALA F:191 , GLY F:192 , PRO F:193 , ILE F:194 , THR F:196 , VMY F:1271
BINDING SITE FOR RESIDUE NAD F1270
3
AC5
SOFTWARE
GLY E:14 , ILE E:15 , ILE E:16 , SER E:20 , ILE E:21 , PHE E:41 , LEU E:63 , ASP E:64 , VAL E:65 , SER E:94 , ILE E:95 , GLY E:96 , ILE E:122 , MET E:147 , ASP E:148 , PHE E:149 , LYS E:165 , GLY E:192 , PRO E:193 , ILE E:194 , THR E:196 , VMY E:1271 , HOH E:2004 , HOH E:2005 , HOH E:2020
BINDING SITE FOR RESIDUE NAD E1270
4
AC6
SOFTWARE
GLY D:14 , ILE D:15 , ILE D:16 , SER D:20 , ILE D:21 , PHE D:41 , LEU D:63 , ASP D:64 , VAL D:65 , SER D:94 , ILE D:95 , GLY D:96 , ILE D:122 , MET D:147 , ASP D:148 , PHE D:149 , LYS D:165 , ILE D:194 , THR D:196 , MET D:199 , VMY D:1271 , HOH D:2005 , HOH D:2012 , HOH D:2052 , HOH D:2053
BINDING SITE FOR RESIDUE NAD D1270
5
BC1
SOFTWARE
GLY C:96 , PHE C:97 , MET C:98 , MET C:103 , GLY C:104 , MET C:161 , ALA C:198 , ILE C:202 , ILE C:215 , NAD C:1270
BINDING SITE FOR RESIDUE VMY C1271
6
BC2
SOFTWARE
GLY D:96 , PHE D:97 , MET D:98 , MET D:103 , GLY D:104 , TYR D:158 , MET D:161 , ALA D:198 , MET D:199 , LEU D:207 , NAD D:1270
BINDING SITE FOR RESIDUE VMY D1271
7
BC3
SOFTWARE
GLY E:96 , PHE E:97 , MET E:98 , GLN E:100 , MET E:103 , GLY E:104 , MET E:161 , LEU E:207 , NAD E:1270
BINDING SITE FOR RESIDUE VMY E1271
8
BC4
SOFTWARE
GLY F:96 , PHE F:97 , MET F:98 , MET F:103 , GLY F:104 , ALA F:157 , MET F:161 , NAD F:1270
BINDING SITE FOR RESIDUE VMY F1271
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_INHA_MYCTU_001 (S94A, chain C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_INHA_MYCTU_001
*
S
94
A
INHA_MYCTU
---
---
C/D/E/F
S
94
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4bqpa_ (A:)
1b: SCOP_d4bqpb_ (B:)
1c: SCOP_d4bqpc_ (C:)
1d: SCOP_d4bqpd_ (D:)
1e: SCOP_d4bqpe_ (E:)
1f: SCOP_d4bqpf_ (F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Enoyl-ACP reductase
(96)
Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
(44)
1a
d4bqpa_
A:
1b
d4bqpb_
B:
1c
d4bqpc_
C:
1d
d4bqpd_
D:
1e
d4bqpe_
E:
1f
d4bqpf_
F:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Asymmetric Unit 2
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (482 KB)
Header - Asym.Unit
Biol.Unit 1 (308 KB)
Header - Biol.Unit 1
Biol.Unit 2 (319 KB)
Header - Biol.Unit 2
Biol.Unit 3 (321 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4BQP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
