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4BQP
Biol. Unit 2
Info
Asym.Unit (482 KB)
Biol.Unit 1 (308 KB)
Biol.Unit 2 (319 KB)
Biol.Unit 3 (321 KB)
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(1)
Title
:
MTB INHA COMPLEX WITH METHYL-THIAZOLE COMPOUND 7
Authors
:
J. A. Read, H. Gingell, P. Madhavapeddi, P. S. Shirude
Date
:
31 May 13 (Deposition) - 11 Dec 13 (Release) - 15 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D,E,F (1x)
Biol. Unit 3: C,D,E,F (1x)
Keywords
:
Oxidoreductase, Acp Enoyl Reductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. S. Shirude, P. Madhavapeddi, M. Naik, K. Murugan, V. Shinde, R. Nandishaiah, J. Bhat, A. Kumar, S. Hameed, G. Holdgate, G. Davies, H. Mcmiken, N. Hegde, A. Ambady, J. Venkatraman, M. Panda, B. Bandodkar, V. K. Sambandamurthy, J. A. Read
Methyl-Thiazoles: A Novel Mode Of Inhibition With The Potential To Develop Novel Inhibitors Targeting Inha In Mycobacterium Tuberculosis.
J. Med. Chem. V. 56 8533 2013
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Hetero Components
(2, 4)
Info
All Hetero Components
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
2d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
2e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
2f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
1a: SODIUM ION (NAa)
3a: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYa)
3b: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYb)
3c: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYc)
3d: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYd)
3e: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYe)
3f: (1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)... (VMYf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NA
-1
Ligand/Ion
SODIUM ION
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
VMY
2
Ligand/Ion
(1S)-1-(5-{[1-(2,6-DIFLUOROBENZYL)-1H-PYRAZOL-3-YL]AMINO}-1,3,4-THIADIAZOL-2-YL)-1-(4-METHYL-1,3-THIAZOL-2-YL)ETHANOL
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Sites
(8, 8)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC6 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC2 (SOFTWARE)
7: BC3 (SOFTWARE)
8: BC4 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLY C:14 , ILE C:15 , ILE C:16 , SER C:20 , ILE C:21 , PHE C:41 , LEU C:63 , ASP C:64 , VAL C:65 , SER C:94 , ILE C:95 , GLY C:96 , ILE C:122 , MET C:147 , ASP C:148 , PHE C:149 , LYS C:165 , ALA C:191 , GLY C:192 , PRO C:193 , ILE C:194 , THR C:196 , VMY C:1271 , HOH C:2002 , HOH C:2003 , HOH C:2004 , HOH C:2025 , HOH C:2026 , HOH C:2035
BINDING SITE FOR RESIDUE NAD C1270
2
AC4
SOFTWARE
GLY F:14 , ILE F:15 , ILE F:16 , SER F:20 , ILE F:21 , PHE F:41 , LEU F:63 , ASP F:64 , VAL F:65 , SER F:94 , ILE F:95 , GLY F:96 , ILE F:122 , MET F:147 , ASP F:148 , PHE F:149 , MET F:161 , LYS F:165 , ALA F:191 , GLY F:192 , PRO F:193 , ILE F:194 , THR F:196 , VMY F:1271
BINDING SITE FOR RESIDUE NAD F1270
3
AC5
SOFTWARE
GLY E:14 , ILE E:15 , ILE E:16 , SER E:20 , ILE E:21 , PHE E:41 , LEU E:63 , ASP E:64 , VAL E:65 , SER E:94 , ILE E:95 , GLY E:96 , ILE E:122 , MET E:147 , ASP E:148 , PHE E:149 , LYS E:165 , GLY E:192 , PRO E:193 , ILE E:194 , THR E:196 , VMY E:1271 , HOH E:2004 , HOH E:2005 , HOH E:2020
BINDING SITE FOR RESIDUE NAD E1270
4
AC6
SOFTWARE
GLY D:14 , ILE D:15 , ILE D:16 , SER D:20 , ILE D:21 , PHE D:41 , LEU D:63 , ASP D:64 , VAL D:65 , SER D:94 , ILE D:95 , GLY D:96 , ILE D:122 , MET D:147 , ASP D:148 , PHE D:149 , LYS D:165 , ILE D:194 , THR D:196 , MET D:199 , VMY D:1271 , HOH D:2005 , HOH D:2012 , HOH D:2052 , HOH D:2053
BINDING SITE FOR RESIDUE NAD D1270
5
BC1
SOFTWARE
GLY C:96 , PHE C:97 , MET C:98 , MET C:103 , GLY C:104 , MET C:161 , ALA C:198 , ILE C:202 , ILE C:215 , NAD C:1270
BINDING SITE FOR RESIDUE VMY C1271
6
BC2
SOFTWARE
GLY D:96 , PHE D:97 , MET D:98 , MET D:103 , GLY D:104 , TYR D:158 , MET D:161 , ALA D:198 , MET D:199 , LEU D:207 , NAD D:1270
BINDING SITE FOR RESIDUE VMY D1271
7
BC3
SOFTWARE
GLY E:96 , PHE E:97 , MET E:98 , GLN E:100 , MET E:103 , GLY E:104 , MET E:161 , LEU E:207 , NAD E:1270
BINDING SITE FOR RESIDUE VMY E1271
8
BC4
SOFTWARE
GLY F:96 , PHE F:97 , MET F:98 , MET F:103 , GLY F:104 , ALA F:157 , MET F:161 , NAD F:1270
BINDING SITE FOR RESIDUE VMY F1271
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_INHA_MYCTU_001 (S94A, chain C/D/E/F, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_INHA_MYCTU_001
*
S
94
A
INHA_MYCTU
---
---
C/D/E/F
S
94
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4bqpa_ (A:)
1b: SCOP_d4bqpb_ (B:)
1c: SCOP_d4bqpc_ (C:)
1d: SCOP_d4bqpd_ (D:)
1e: SCOP_d4bqpe_ (E:)
1f: SCOP_d4bqpf_ (F:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
Enoyl-ACP reductase
(96)
Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
(44)
1a
d4bqpa_
A:
1b
d4bqpb_
B:
1c
d4bqpc_
C:
1d
d4bqpd_
D:
1e
d4bqpe_
E:
1f
d4bqpf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (482 KB)
Header - Asym.Unit
Biol.Unit 1 (308 KB)
Header - Biol.Unit 1
Biol.Unit 2 (319 KB)
Header - Biol.Unit 2
Biol.Unit 3 (321 KB)
Header - Biol.Unit 3
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