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4BQK
Asym. Unit
Info
Asym.Unit (419 KB)
Biol.Unit 1 (208 KB)
Biol.Unit 2 (205 KB)
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(1)
Title
:
RICE IMPORTIN_ALPHA : VIRD2NLS COMPLEX
Authors
:
C. -W. Chang, R. M. Counago, S. J. Williams, B. Kobe
Date
:
31 May 13 (Deposition) - 19 Feb 14 (Release) - 18 Jun 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,C (1x)
Keywords
:
Transport Protein, Hydrolase, Nuclear Localization Signal
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. -W. Chang, S. J. Williams, R. M. Counago, B. Kobe
Structural Basis Of Interaction Of Bipartite Nuclear Localization Signal From Agrobacterium Vird2 With Rice Importin-Alpha
Mol. Plant V. 7 1061 2014
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Hetero Components
(1, 9)
Info
All Hetero Components
1a: DI(HYDROXYETHYL)ETHER (PEGa)
1b: DI(HYDROXYETHYL)ETHER (PEGb)
1c: DI(HYDROXYETHYL)ETHER (PEGc)
1d: DI(HYDROXYETHYL)ETHER (PEGd)
1e: DI(HYDROXYETHYL)ETHER (PEGe)
1f: DI(HYDROXYETHYL)ETHER (PEGf)
1g: DI(HYDROXYETHYL)ETHER (PEGg)
1h: DI(HYDROXYETHYL)ETHER (PEGh)
1i: DI(HYDROXYETHYL)ETHER (PEGi)
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No.
Name
Count
Type
Full Name
1
PEG
9
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:161 , HOH A:2080 , THR B:336 , PRO B:373 , HOH B:2114 , HOH B:2156
BINDING SITE FOR RESIDUE PEG B1495
2
AC2
SOFTWARE
VAL B:164 , LYS B:165 , LEU B:167 , GLY B:168 , PRO B:204 , ALA B:207 , ILE B:422 , HOH B:2025
BINDING SITE FOR RESIDUE PEG B1496
3
AC3
SOFTWARE
ARG B:230 , TRP B:264 , TYR B:268 , ARG C:430
BINDING SITE FOR RESIDUE PEG B1497
4
AC4
SOFTWARE
PRO B:242 , PRO B:245 , GLU B:468 , GLU B:471 , ASN B:472 , HOH B:2059 , HOH B:2147
BINDING SITE FOR RESIDUE PEG B1498
5
AC5
SOFTWARE
VAL A:164 , LYS A:165 , LEU A:167 , GLY A:168 , PRO A:204 , HOH A:2053 , HOH A:2055 , HOH A:2229
BINDING SITE FOR RESIDUE PEG A1495
6
AC6
SOFTWARE
ASP A:172 , ARG A:175 , GLU A:176 , HIS A:212 , LYS A:214 , MET A:217
BINDING SITE FOR RESIDUE PEG A1496
7
AC7
SOFTWARE
LEU A:209 , ASN A:210 , ALA A:246 , ARG A:249 , HOH A:2084
BINDING SITE FOR RESIDUE PEG A1497
8
AC8
SOFTWARE
ARG A:241 , LEU A:244 , ALA A:279 , ALA A:283
BINDING SITE FOR RESIDUE PEG A1498
9
AC9
SOFTWARE
GLN B:363 , ASP B:403
BINDING SITE FOR RESIDUE PEG B1499
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:115-158,B:115-158|A:158-200,B:15...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
IMA1A_ORYSJ
115-158
158-200
242-284
326-369
8
A:115-158
B:115-158
A:158-200
B:158-200
A:242-284
B:242-284
A:326-369
B:326-369
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4bqka_ (A:)
1b: SCOP_d4bqkb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Rice (Oryza sativa) [TaxId: 4530]
(2)
1a
d4bqka_
A:
1b
d4bqkb_
B:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (419 KB)
Header - Asym.Unit
Biol.Unit 1 (208 KB)
Header - Biol.Unit 1
Biol.Unit 2 (205 KB)
Header - Biol.Unit 2
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