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4BQ3
Biol. Unit 2
Info
Asym.Unit (534 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (140 KB)
Biol.Unit 3 (136 KB)
Biol.Unit 4 (135 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF AN EXO-BETA-AGARASE
Authors
:
B. Pluvinage, J. H. Hehemann, A. B. Boraston
Date
:
29 May 13 (Deposition) - 14 Aug 13 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, J. H. Hehemann, A. B. Boraston
Substrate Recognition And Hydrolysis By A Family 50 Exo-Beta-Agarase Aga50D From The Marine Bacterium Saccharophagus Degradans
J. Biol. Chem. V. 288 28078 2013
[
close entry info
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: NEOAGAROBIOSE (47Na)
1b: NEOAGAROBIOSE (47Nb)
1c: NEOAGAROBIOSE (47Nc)
1d: NEOAGAROBIOSE (47Nd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
47N
1
Ligand/Ion
NEOAGAROBIOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
GOL
9
Ligand/Ion
GLYCEROL
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Sites
(12, 12)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC9 (SOFTWARE)
03: BC1 (SOFTWARE)
04: BC6 (SOFTWARE)
05: BC7 (SOFTWARE)
06: BC8 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC3 (SOFTWARE)
09: CC4 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
LEU B:175 , TRP B:199 , PHE B:493 , TRP B:494 , GLU B:534 , ARG B:539 , TRP B:650 , LEU B:710 , GOL B:1794 , HOH B:2161 , HOH B:2498 , HOH B:2579 , HOH B:2580
BINDING SITE FOR RESIDUE 47N B1793
02
AC9
SOFTWARE
TRP B:494 , GLU B:534 , TYR B:672 , GLU B:695 , HIS B:697 , PHE B:742 , ARG B:752 , GLU B:757 , TYR B:759 , 47N B:1793 , GOL B:1795
BINDING SITE FOR RESIDUE GOL B1794
03
BC1
SOFTWARE
ILE B:331 , ARG B:333 , ASN B:336 , ASP B:362 , SER B:363 , TRP B:461 , TRP B:479 , PHE B:742 , ARG B:752 , GOL B:1794 , HOH B:2665
BINDING SITE FOR RESIDUE GOL B1795
04
BC6
SOFTWARE
GLN B:252 , ASN B:253 , TYR B:258 , HIS B:703 , GLY B:704 , ASP B:746 , ASP B:765 , VAL B:766 , HOH B:2616 , HOH B:2643
BINDING SITE FOR RESIDUE GOL B1796
05
BC7
SOFTWARE
LYS A:300 , HOH A:2292 , HOH A:2293 , PRO B:285 , SER B:286 , HOH B:2274 , HOH B:2276 , HOH B:2666
BINDING SITE FOR RESIDUE GOL B1797
06
BC8
SOFTWARE
TRP B:479 , TRP B:494 , HOH B:2365 , HOH B:2444 , HOH B:2495 , HOH B:2646
BINDING SITE FOR RESIDUE GOL B1798
07
CC1
SOFTWARE
HIS B:92 , SER B:93 , GLN B:679 , LYS B:680 , HOH B:2020 , HOH B:2599
BINDING SITE FOR RESIDUE GOL B1799
08
CC3
SOFTWARE
PRO A:435 , HIS B:635 , TYR B:636
BINDING SITE FOR RESIDUE GOL B1800
09
CC4
SOFTWARE
SER A:517 , HIS A:635 , TYR A:636 , PRO A:638 , GLU B:432 , THR B:433 , TYR B:434 , PRO B:435 , HOH B:2408
BINDING SITE FOR RESIDUE GOL A1795
10
CC8
SOFTWARE
HIS B:630 , GLU B:634 , ASP B:665 , GOL B:1802 , HOH B:2566 , HOH B:2589
BINDING SITE FOR RESIDUE GOL B1801
11
CC9
SOFTWARE
LYS B:662 , TYR B:663 , ALA B:664 , ASP B:665 , LYS B:689 , GOL B:1801 , HOH B:2587 , HOH B:2667
BINDING SITE FOR RESIDUE GOL B1802
12
DC7
SOFTWARE
ASP B:50 , GLU B:52 , SER B:80 , LYS B:81 , ASP B:228
BINDING SITE FOR RESIDUE CA B1803
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (534 KB)
Header - Asym.Unit
Biol.Unit 1 (140 KB)
Header - Biol.Unit 1
Biol.Unit 2 (140 KB)
Header - Biol.Unit 2
Biol.Unit 3 (136 KB)
Header - Biol.Unit 3
Biol.Unit 4 (135 KB)
Header - Biol.Unit 4
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