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4BQ3
Asym. Unit
Info
Asym.Unit (534 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (140 KB)
Biol.Unit 3 (136 KB)
Biol.Unit 4 (135 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF AN EXO-BETA-AGARASE
Authors
:
B. Pluvinage, J. H. Hehemann, A. B. Boraston
Date
:
29 May 13 (Deposition) - 14 Aug 13 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, J. H. Hehemann, A. B. Boraston
Substrate Recognition And Hydrolysis By A Family 50 Exo-Beta-Agarase Aga50D From The Marine Bacterium Saccharophagus Degradans
J. Biol. Chem. V. 288 28078 2013
[
close entry info
]
Hetero Components
(3, 35)
Info
All Hetero Components
1a: NEOAGAROBIOSE (47Na)
1b: NEOAGAROBIOSE (47Nb)
1c: NEOAGAROBIOSE (47Nc)
1d: NEOAGAROBIOSE (47Nd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
47N
4
Ligand/Ion
NEOAGAROBIOSE
2
CA
4
Ligand/Ion
CALCIUM ION
3
GOL
27
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE D:493 , TRP D:494 , GLU D:534 , ARG D:539 , TRP D:650 , LEU D:710 , GOL D:1794 , HOH D:2124 , HOH D:2396 , HOH D:2454 , HOH D:2455 , HOH D:2526
BINDING SITE FOR RESIDUE 47N D1793
02
AC2
SOFTWARE
TRP A:199 , PHE A:493 , TRP A:494 , GLU A:534 , ARG A:539 , TRP A:650 , LEU A:710 , GOL A:1793 , HOH A:2172 , HOH A:2473 , HOH A:2560 , HOH A:2561 , HOH A:2643
BINDING SITE FOR RESIDUE 47N A1792
03
AC3
SOFTWARE
LEU B:175 , TRP B:199 , PHE B:493 , TRP B:494 , GLU B:534 , ARG B:539 , TRP B:650 , LEU B:710 , GOL B:1794 , HOH B:2161 , HOH B:2498 , HOH B:2579 , HOH B:2580
BINDING SITE FOR RESIDUE 47N B1793
04
AC4
SOFTWARE
TRP C:199 , TRP C:494 , GLU C:534 , ARG C:539 , TRP C:650 , LEU C:710 , GOL C:1793 , HOH C:2115 , HOH C:2387 , HOH C:2440 , HOH C:2441 , HOH C:2512
BINDING SITE FOR RESIDUE 47N C1792
05
AC5
SOFTWARE
TRP D:494 , GLU D:534 , TYR D:672 , GLU D:695 , HIS D:697 , PHE D:742 , ARG D:752 , GLU D:757 , TYR D:759 , 47N D:1793 , GOL D:1795 , HOH D:2527
BINDING SITE FOR RESIDUE GOL D1794
06
AC6
SOFTWARE
ILE D:331 , ARG D:333 , ASN D:336 , ASP D:362 , SER D:363 , TRP D:461 , TRP D:479 , ARG D:752 , GOL D:1794 , HOH D:2527
BINDING SITE FOR RESIDUE GOL D1795
07
AC7
SOFTWARE
TRP A:494 , GLU A:534 , TYR A:672 , GLU A:695 , HIS A:697 , PHE A:742 , ARG A:752 , GLU A:757 , 47N A:1792 , GOL A:1794 , HOH A:2644
BINDING SITE FOR RESIDUE GOL A1793
08
AC8
SOFTWARE
ILE A:331 , ARG A:333 , ASN A:336 , ASP A:362 , SER A:363 , TRP A:461 , TRP A:479 , ARG A:752 , GOL A:1793 , HOH A:2644
BINDING SITE FOR RESIDUE GOL A1794
09
AC9
SOFTWARE
TRP B:494 , GLU B:534 , TYR B:672 , GLU B:695 , HIS B:697 , PHE B:742 , ARG B:752 , GLU B:757 , TYR B:759 , 47N B:1793 , GOL B:1795
BINDING SITE FOR RESIDUE GOL B1794
10
BC1
SOFTWARE
ILE B:331 , ARG B:333 , ASN B:336 , ASP B:362 , SER B:363 , TRP B:461 , TRP B:479 , PHE B:742 , ARG B:752 , GOL B:1794 , HOH B:2665
BINDING SITE FOR RESIDUE GOL B1795
11
BC2
SOFTWARE
TRP C:494 , GLU C:534 , TYR C:672 , GLU C:695 , HIS C:697 , PHE C:742 , ARG C:752 , GLU C:757 , TYR C:759 , 47N C:1792 , GOL C:1794
BINDING SITE FOR RESIDUE GOL C1793
12
BC3
SOFTWARE
ARG C:333 , ASN C:336 , ASP C:362 , TRP C:461 , TRP C:494 , ARG C:752 , GOL C:1793 , HOH C:2385
BINDING SITE FOR RESIDUE GOL C1794
13
BC4
SOFTWARE
GLN C:252 , ASN C:253 , TYR C:258 , HIS C:703 , GLY C:704 , SER C:705 , ASP C:746 , ASP C:765 , VAL C:766 , HOH C:2471 , HOH C:2474 , HOH C:2497
BINDING SITE FOR RESIDUE GOL C1795
14
BC5
SOFTWARE
GLN D:252 , ASN D:253 , TYR D:258 , HIS D:703 , ASP D:746 , LEU D:749 , ASP D:765 , VAL D:766 , HOH D:2485 , HOH D:2508
BINDING SITE FOR RESIDUE GOL D1796
15
BC6
SOFTWARE
GLN B:252 , ASN B:253 , TYR B:258 , HIS B:703 , GLY B:704 , ASP B:746 , ASP B:765 , VAL B:766 , HOH B:2616 , HOH B:2643
BINDING SITE FOR RESIDUE GOL B1796
16
BC7
SOFTWARE
LYS A:300 , HOH A:2292 , HOH A:2293 , PRO B:285 , SER B:286 , HOH B:2274 , HOH B:2276 , HOH B:2666
BINDING SITE FOR RESIDUE GOL B1797
17
BC8
SOFTWARE
TRP B:479 , TRP B:494 , HOH B:2365 , HOH B:2444 , HOH B:2495 , HOH B:2646
BINDING SITE FOR RESIDUE GOL B1798
18
BC9
SOFTWARE
LYS C:300 , ALA C:301 , HOH C:2224 , PRO D:285 , SER D:286 , HOH D:2205
BINDING SITE FOR RESIDUE GOL D1797
19
CC1
SOFTWARE
HIS B:92 , SER B:93 , GLN B:679 , LYS B:680 , HOH B:2020 , HOH B:2599
BINDING SITE FOR RESIDUE GOL B1799
20
CC2
SOFTWARE
PRO C:360 , TRP C:479 , TRP C:494 , HOH C:2274 , HOH C:2342 , HOH C:2359 , HOH C:2384
BINDING SITE FOR RESIDUE GOL C1796
21
CC3
SOFTWARE
PRO A:435 , HIS B:635 , TYR B:636
BINDING SITE FOR RESIDUE GOL B1800
22
CC4
SOFTWARE
SER A:517 , HIS A:635 , TYR A:636 , PRO A:638 , GLU B:432 , THR B:433 , TYR B:434 , PRO B:435 , HOH B:2408
BINDING SITE FOR RESIDUE GOL A1795
23
CC5
SOFTWARE
GLU C:432 , TYR C:434 , HIS D:635 , TYR D:636
BINDING SITE FOR RESIDUE GOL D1798
24
CC6
SOFTWARE
GLN A:252 , ASN A:253 , TYR A:258 , HIS A:703 , ASP A:746 , ASP A:765 , VAL A:766 , HOH A:2598 , HOH A:2623
BINDING SITE FOR RESIDUE GOL A1796
25
CC7
SOFTWARE
HIS C:630 , TYR C:663 , ASP C:665 , HOH C:2434 , HOH C:2447 , HOH C:2448
BINDING SITE FOR RESIDUE GOL C1797
26
CC8
SOFTWARE
HIS B:630 , GLU B:634 , ASP B:665 , GOL B:1802 , HOH B:2566 , HOH B:2589
BINDING SITE FOR RESIDUE GOL B1801
27
CC9
SOFTWARE
LYS B:662 , TYR B:663 , ALA B:664 , ASP B:665 , LYS B:689 , GOL B:1801 , HOH B:2587 , HOH B:2667
BINDING SITE FOR RESIDUE GOL B1802
28
DC1
SOFTWARE
HIS A:630 , ASP A:665 , HOH A:2547 , HOH A:2553 , HOH A:2567 , HOH A:2645
BINDING SITE FOR RESIDUE GOL A1797
29
DC2
SOFTWARE
HIS D:630 , GLU D:634 , TYR D:663 , ASP D:665 , GOL D:1800 , HOH D:2442 , HOH D:2447 , HOH D:2460
BINDING SITE FOR RESIDUE GOL D1799
30
DC3
SOFTWARE
HIS D:630 , TYR D:663 , ALA D:664 , ASP D:665 , LYS D:689 , GOL D:1799 , HOH D:2458 , HOH D:2528
BINDING SITE FOR RESIDUE GOL D1800
31
DC4
SOFTWARE
GLN A:91 , HIS A:92 , SER A:93 , TYR A:94 , GLN A:679 , HOH A:2072 , HOH A:2579
BINDING SITE FOR RESIDUE GOL A1798
32
DC5
SOFTWARE
ASP D:50 , GLU D:52 , SER D:80 , LYS D:81 , ASP D:228
BINDING SITE FOR RESIDUE CA D1801
33
DC6
SOFTWARE
ASP A:50 , GLU A:52 , SER A:80 , LYS A:81 , ASP A:228 , HOH A:2009
BINDING SITE FOR RESIDUE CA A1799
34
DC7
SOFTWARE
ASP B:50 , GLU B:52 , SER B:80 , LYS B:81 , ASP B:228
BINDING SITE FOR RESIDUE CA B1803
35
DC8
SOFTWARE
ASP C:50 , GLU C:52 , SER C:80 , LYS C:81 , ASP C:228 , HOH C:2025
BINDING SITE FOR RESIDUE CA C1798
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Info
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[
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asym.Unit (534 KB)
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