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4BQ2
Asym. Unit
Info
Asym.Unit (541 KB)
Biol.Unit 1 (140 KB)
Biol.Unit 2 (141 KB)
Biol.Unit 3 (140 KB)
Biol.Unit 4 (136 KB)
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(1)
Title
:
STRUCTURAL ANALYSIS OF AN EXO-BETA-AGARASE
Authors
:
B. Pluvinage, J. H. Hehemann, A. B. Boraston
Date
:
29 May 13 (Deposition) - 14 Aug 13 (Release) - 16 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Pluvinage, J. H. Hehemann, A. B. Boraston
Substrate Recognition And Hydrolysis By A Family 50 Exo-Beta-Agarase Aga50D From The Marine Bacterium Saccharophagus Degradans
J. Biol. Chem. V. 288 28078 2013
[
close entry info
]
Hetero Components
(2, 26)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
2t: GLYCEROL (GOLt)
2u: GLYCEROL (GOLu)
2v: GLYCEROL (GOLv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GOL
22
Ligand/Ion
GLYCEROL
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE B:331 , ARG B:333 , ASN B:336 , ASP B:362 , SER B:363 , TRP B:461 , TRP B:479 , ARG B:752 , GOL B:1792 , HOH B:2654
BINDING SITE FOR RESIDUE GOL B1791
02
AC2
SOFTWARE
TRP B:494 , GLU B:534 , TYR B:672 , GLU B:695 , HIS B:697 , LEU B:710 , PHE B:742 , ARG B:752 , GLU B:757 , TYR B:759 , GOL B:1791 , HOH B:2480 , HOH B:2482 , HOH B:2654
BINDING SITE FOR RESIDUE GOL B1792
03
AC3
SOFTWARE
TRP C:494 , GLU C:534 , TYR C:672 , GLU C:695 , HIS C:697 , PHE C:742 , ARG C:752 , GLU C:757 , HOH C:2497
BINDING SITE FOR RESIDUE GOL C1793
04
AC4
SOFTWARE
ARG C:333 , ASN C:336 , ASP C:362 , SER C:363 , TRP C:461 , TRP C:479 , PHE C:742 , ARG C:752
BINDING SITE FOR RESIDUE GOL C1794
05
AC5
SOFTWARE
GLN A:91 , HIS A:92 , SER A:93 , TYR A:94 , GLN A:679 , HOH A:2023 , ARG C:66 , HOH C:2028 , HOH C:2029
BINDING SITE FOR RESIDUE GOL C1795
06
AC6
SOFTWARE
SER D:112 , HIS D:162 , PRO D:236 , PRO D:237 , GLN D:238 , HOH D:2099 , HOH D:2173
BINDING SITE FOR RESIDUE GOL D1792
07
AC7
SOFTWARE
LYS A:300 , ALA A:301 , HOH A:2297 , PRO C:285 , SER C:286 , HOH C:2289 , HOH C:2291 , HOH C:2292
BINDING SITE FOR RESIDUE GOL A1791
08
AC8
SOFTWARE
LYS B:300 , ALA B:301 , HOH B:2294 , HOH B:2295 , PRO D:285 , SER D:286 , HOH D:2267
BINDING SITE FOR RESIDUE GOL D1793
09
AC9
SOFTWARE
GLN A:252 , ASN A:253 , TYR A:258 , HIS A:703 , ASP A:746 , ASP A:765 , VAL A:766 , HOH A:2599 , HOH A:2625
BINDING SITE FOR RESIDUE GOL A1792
10
BC1
SOFTWARE
GLN B:252 , ASN B:253 , TYR B:258 , HIS B:703 , GLY B:704 , ASP B:746 , ASP B:765 , VAL B:766 , HOH B:2609 , HOH B:2611 , HOH B:2634
BINDING SITE FOR RESIDUE GOL B1793
11
BC2
SOFTWARE
GLN B:91 , HIS B:92 , SER B:93 , GLN B:679 , HOH B:2018 , ARG D:66 , HOH D:2032 , HOH D:2033
BINDING SITE FOR RESIDUE GOL B1794
12
BC3
SOFTWARE
HIS C:703 , GLY C:704 , SER C:705 , ASP C:746 , ASP C:765 , VAL C:766 , HOH C:2239 , HOH C:2604 , HOH C:2607 , HOH C:2630
BINDING SITE FOR RESIDUE GOL C1796
13
BC4
SOFTWARE
ARG A:333 , ASN A:336 , ASP A:362 , SER A:363 , TRP A:461 , PHE A:742 , ARG A:752 , GOL A:1795
BINDING SITE FOR RESIDUE GOL A1793
14
BC5
SOFTWARE
HIS A:630 , LYS A:662 , TYR A:663 , ALA A:664 , ASP A:665 , LYS A:689
BINDING SITE FOR RESIDUE GOL A1794
15
BC6
SOFTWARE
ARG D:333 , ASN D:336 , ASP D:362 , ASN D:533 , ARG D:752 , HOH D:2442
BINDING SITE FOR RESIDUE GOL D1794
16
BC7
SOFTWARE
TRP A:494 , GLU A:534 , TYR A:672 , GLU A:695 , HIS A:697 , PHE A:742 , ARG A:752 , GLU A:757 , TYR A:759 , GOL A:1793 , HOH A:2489
BINDING SITE FOR RESIDUE GOL A1795
17
BC8
SOFTWARE
ARG B:539
BINDING SITE FOR RESIDUE GOL B1795
18
BC9
SOFTWARE
LYS A:364 , GLY A:365 , HOH A:2351 , HOH A:2645
BINDING SITE FOR RESIDUE GOL A1796
19
CC1
SOFTWARE
LEU B:279 , GLU B:444 , ASP B:448 , ARG B:471
BINDING SITE FOR RESIDUE GOL B1796
20
CC2
SOFTWARE
SER C:112 , HIS C:162 , ASN C:235 , PRO C:236 , PRO C:237 , GLN C:238 , HOH C:2081 , HOH C:2211
BINDING SITE FOR RESIDUE GOL C1797
21
CC3
SOFTWARE
ASN B:59 , PRO B:101 , GLU B:102 , SER D:542 , ASP D:543 , HOH D:2459
BINDING SITE FOR RESIDUE GOL B1797
22
CC4
SOFTWARE
THR B:359 , LYS B:364 , GLY B:365 , HOH B:2655
BINDING SITE FOR RESIDUE GOL B1798
23
CC5
SOFTWARE
ASP D:50 , GLU D:52 , SER D:80 , LYS D:81 , ASP D:228 , HOH D:2006
BINDING SITE FOR RESIDUE CA D1795
24
CC6
SOFTWARE
ASP A:50 , GLU A:52 , SER A:80 , LYS A:81 , ASP A:228 , HOH A:2007
BINDING SITE FOR RESIDUE CA A1797
25
CC7
SOFTWARE
ASP B:50 , GLU B:52 , LYS B:81 , ASP B:228
BINDING SITE FOR RESIDUE CA B1799
26
CC8
SOFTWARE
ASP C:50 , GLU C:52 , SER C:80 , LYS C:81 , ASP C:228 , HOH C:2006
BINDING SITE FOR RESIDUE CA C1798
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
[
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Atom Selection
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)
Protein
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Sidechain
Hetero
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Protein & NOT Site
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (541 KB)
Header - Asym.Unit
Biol.Unit 1 (140 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
Biol.Unit 3 (140 KB)
Header - Biol.Unit 3
Biol.Unit 4 (136 KB)
Header - Biol.Unit 4
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