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Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
BCL-XL BOUND TO ALPHA BETA PUMA BH3 PEPTIDE 5
Authors
:
B. J. Smith, E. F. Lee, J. W. Checco, S. H. Gellman, W. D. Fairlie
Date
:
27 May 13 (Deposition) - 09 Apr 14 (Release) - 10 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.76
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Smith, E. F. Lee, J. W. Checco, M. Evangelista, S. H. Gellman, W. D. Fairlie
Structure-Guided Rational Design Of Alpha/Beta-Peptide Foldamers With High Affinity For Bcl-2 Family Prosurvival Proteins.
Chembiochem V. 14 1564 2013
[
close entry info
]
Hetero Components
(11, 34)
Info
All Hetero Components
01a: ACETYL GROUP (ACEa)
02a: 2-AMINO-HEPTANOIC ACID (AHPa)
02b: 2-AMINO-HEPTANOIC ACID (AHPb)
03a: (3S)-3-AMINOBUTANOIC ACID (B3Aa)
03b: (3S)-3-AMINOBUTANOIC ACID (B3Ab)
04a: 3-AMINOPENTANEDIOIC ACID (B3Da)
04b: 3-AMINOPENTANEDIOIC ACID (B3Db)
05a: (3S)-3-AMINOHEXANEDIOIC ACID (B3Ea)
05b: (3S)-3-AMINOHEXANEDIOIC ACID (B3Eb)
06a: (3S)-3,6-DIAMINO-6-OXOHEXANOIC ACI... (B3Qa)
06b: (3S)-3,6-DIAMINO-6-OXOHEXANOIC ACI... (B3Qb)
07a: CADMIUM ION (CDa)
07b: CADMIUM ION (CDb)
07c: CADMIUM ION (CDc)
07d: CADMIUM ION (CDd)
07e: CADMIUM ION (CDe)
07f: CADMIUM ION (CDf)
07g: CADMIUM ION (CDg)
07h: CADMIUM ION (CDh)
07i: CADMIUM ION (CDi)
07j: CADMIUM ION (CDj)
07k: CADMIUM ION (CDk)
07l: CADMIUM ION (CDl)
07m: CADMIUM ION (CDm)
07n: CADMIUM ION (CDn)
07o: CADMIUM ION (CDo)
08a: 1,2-ETHANEDIOL (EDOa)
08b: 1,2-ETHANEDIOL (EDOb)
09a: (3S)-3-AMINO-6-[(DIAMINOMETHYLIDEN... (HR7a)
09b: (3S)-3-AMINO-6-[(DIAMINOMETHYLIDEN... (HR7b)
10a: (3S)-3-AMINO-4-(1H-INDOL-3-YL)BUTA... (HT7a)
10b: (3S)-3-AMINO-4-(1H-INDOL-3-YL)BUTA... (HT7b)
11a: AMINO GROUP (NH2a)
11b: AMINO GROUP (NH2b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
AHP
2
Mod. Amino Acid
2-AMINO-HEPTANOIC ACID
3
B3A
2
Mod. Amino Acid
(3S)-3-AMINOBUTANOIC ACID
4
B3D
2
Mod. Amino Acid
3-AMINOPENTANEDIOIC ACID
5
B3E
2
Mod. Amino Acid
(3S)-3-AMINOHEXANEDIOIC ACID
6
B3Q
2
Mod. Amino Acid
(3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID
7
CD
15
Ligand/Ion
CADMIUM ION
8
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
9
HR7
2
Mod. Amino Acid
(3S)-3-AMINO-6-[(DIAMINOMETHYLIDENE)AMINO]HEXANOIC ACID
10
HT7
2
Mod. Amino Acid
(3S)-3-AMINO-4-(1H-INDOL-3-YL)BUTANOIC ACID
11
NH2
2
Mod. Amino Acid
AMINO GROUP
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY B:186 , ASP B:189 , HOH B:2069
BINDING SITE FOR RESIDUE CD B 1196
02
AC2
SOFTWARE
GLY A:186 , ASP A:189 , ASP B:176 , HOH B:2058 , HOH B:2073 , HOH B:2074
BINDING SITE FOR RESIDUE CD B 1197
03
AC3
SOFTWARE
HIS B:177 , HOH B:2059 , HOH B:2060 , HOH B:2063
BINDING SITE FOR RESIDUE CD B 1198
04
AC4
SOFTWARE
GLU A:129 , GLU A:158 , HOH A:2059
BINDING SITE FOR RESIDUE CD A 1196
05
AC5
SOFTWARE
GLU A:92 , HOH A:2023 , HOH A:2042 , HOH A:2043
BINDING SITE FOR RESIDUE CD A 1197
06
AC6
SOFTWARE
HIS A:113
BINDING SITE FOR RESIDUE CD A 1198
07
AC7
SOFTWARE
GLU A:153 , HOH A:2051 , HOH A:2064 , HOH A:2065 , HOH A:2066
BINDING SITE FOR RESIDUE CD A 1199
08
AC8
SOFTWARE
GLN B:88 , GLU B:92 , HOH B:2012 , HOH B:2026 , HOH B:2075
BINDING SITE FOR RESIDUE CD B 1199
09
AC9
SOFTWARE
GLU B:129 , ARG D:3 , B3E D:4
BINDING SITE FOR RESIDUE CD B 1200
10
BC1
SOFTWARE
ASP B:156 , HOH B:2052 , HOH B:2053
BINDING SITE FOR RESIDUE CD B 1201
11
BC2
SOFTWARE
HIS A:177
BINDING SITE FOR RESIDUE CD A 1200
12
BC3
SOFTWARE
HIS B:113 , B3D C:15
BINDING SITE FOR RESIDUE CD B 1202
13
BC4
SOFTWARE
HIS B:113 , B3D C:15
BINDING SITE FOR RESIDUE CD B 1203
14
BC5
SOFTWARE
GLU B:158 , HOH B:2076
BINDING SITE FOR RESIDUE CD B 1204
15
BC6
SOFTWARE
GLU A:179 , HOH A:2068 , HOH A:2069 , GLU B:124
BINDING SITE FOR RESIDUE CD A 1201
16
BC7
SOFTWARE
ASN B:136 , HOH B:2047 , HOH B:2077 , HOH B:2078
BINDING SITE FOR RESIDUE EDO B 1205
17
BC8
SOFTWARE
GLN A:88 , ARG A:91 , ASP B:11 , ARG B:91
BINDING SITE FOR RESIDUE EDO A 1202
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(6, 12)
Info
All PROSITE Patterns/Profiles
1: BH4_1 (A:4-24,B:4-24)
2: BH4_2 (A:5-24,B:5-24)
3: BH3 (A:86-100,B:86-100)
4: BCL2_FAMILY (A:90-190,B:90-190)
5: BH1 (A:130-148,B:130-148)
6: BH2 (A:181-192,B:181-192)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BH4_1
PS01260
Apoptosis regulator, Bcl-2 family BH4 motif signature.
B2CL1_HUMAN
4-24
2
A:4-24
B:4-24
2
BH4_2
PS50063
Apoptosis regulator, Bcl-2 family BH4 motif profile.
B2CL1_HUMAN
5-24
2
A:5-24
B:5-24
3
BH3
PS01259
Apoptosis regulator, Bcl-2 family BH3 motif signature.
B2CL1_HUMAN
86-100
2
A:86-100
B:86-100
4
BCL2_FAMILY
PS50062
BCL2-like apoptosis inhibitors family profile.
B2CL1_HUMAN
90-190
2
A:90-190
B:90-190
5
BH1
PS01080
Apoptosis regulator, Bcl-2 family BH1 motif signature.
B2CL1_HUMAN
130-148
2
A:130-148
B:130-148
6
BH2
PS01258
Apoptosis regulator, Bcl-2 family BH2 motif signature.
B2CL1_HUMAN
181-192
2
A:181-192
B:181-192
[
close PROSITE info
]
Exons
(2, 4)
Info
All Exons
Exon 1.3a (A:1-188 (gaps) | B:2-188 (gaps))
Exon 1.4c (A:189-195 | B:189-195)
View:
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All Exon Boundaries
1: Boundary -/1.3a
2: Boundary 1.3a/1.4c
3: Boundary 1.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000376062
3a
ENSE00001469279
chr20:
30310400-30309458
943
B2CL1_HUMAN
1-188
188
2
A:1-188 (gaps)
B:2-188 (gaps)
188
187
1.4c
ENST00000376062
4c
ENSE00001469296
chr20:
30253889-30252255
1635
B2CL1_HUMAN
189-233
45
2
A:189-195
B:189-195
7
7
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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