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4BN5
Biol. Unit 12
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Asym.Unit (1.1 MB)
Biol.Unit 1 (102 KB)
Biol.Unit 10 (102 KB)
Biol.Unit 11 (104 KB)
Biol.Unit 12 (103 KB)
Biol.Unit 2 (102 KB)
Biol.Unit 3 (103 KB)
Biol.Unit 4 (100 KB)
Biol.Unit 5 (100 KB)
Biol.Unit 6 (103 KB)
Biol.Unit 7 (102 KB)
Biol.Unit 8 (104 KB)
Biol.Unit 9 (102 KB)
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Title
:
STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH SRT1720 INHIBITOR
Authors
:
G. T. T. Nguyen, S. Schaefer, M. Gertz, M. Weyand, C. Steegborn
Date
:
13 May 13 (Deposition) - 26 Jun 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Hydrolase, Lysine Deacetylase, Adp Ribose
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. T. T. Nguyen, S. Schaefer, M. Gertz, M. Weyand, C. Steegborn
Structures Of Human Sirtuin 3 Complexes With Adp-Ribose And With Carba-Nad+ And Srt1720: Binding Details And Inhibition Mechanism
Acta Crystallogr. , Sect. D V. 69 1423 2013
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAa)
1b: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAb)
1c: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAc)
1d: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAd)
1e: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAe)
1f: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAf)
1g: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAg)
1h: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAh)
1i: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAi)
1j: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAj)
1k: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAk)
1l: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7a)
3b: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7b)
3c: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7c)
3d: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7d)
3e: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7e)
3f: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7f)
3g: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7g)
3h: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7h)
3i: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7i)
3j: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7j)
3k: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7k)
3l: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7l)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CNA
1
Ligand/Ion
CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
GOL
1
Ligand/Ion
GLYCEROL
3
SR7
1
Ligand/Ion
N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMIDAZO[2,1-B][1,3]THIAZOL-6-YL]PHENYL}QUINOXALINE-2-CARBOXAMIDE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(4, 4)
Info
All Sites
1: EC1 (SOFTWARE)
2: EC2 (SOFTWARE)
3: EC3 (SOFTWARE)
4: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
EC1
SOFTWARE
ALA L:146 , GLY L:147 , SER L:149 , THR L:150 , ASP L:156 , GLN L:228 , ASN L:229 , ILE L:230 , ASP L:231 , HIS L:248 , THR L:320 , SER L:321 , LEU L:322 , GLU L:323 , ASN L:344 , ARG L:345 , GLY L:364 , VAL L:366 , SR7 L:1397
BINDING SITE FOR RESIDUE CNA L1395
2
EC2
SOFTWARE
ARG J:301 , ARG L:301
BINDING SITE FOR RESIDUE GOL L1396
3
EC3
SOFTWARE
PRO L:155 , ASP L:156 , PHE L:157 , ARG L:158 , PHE L:180 , ILE L:230 , HIS L:248 , VAL L:292 , PHE L:294 , CNA L:1395
BINDING SITE FOR RESIDUE SR7 L1397
4
EC4
SOFTWARE
CYS L:256 , CYS L:259 , CYS L:280 , CYS L:283
BINDING SITE FOR RESIDUE ZN L1398
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051978 (V208I, chain L, )
2: VAR_051979 (G369S, chain L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051978
V
208
I
SIR3_HUMAN
Polymorphism
11246020
L
V
208
I
2
UniProt
VAR_051979
G
369
S
SIR3_HUMAN
Polymorphism
3020901
L
G
369
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (L:126-382)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR3_HUMAN
126-382
1
-
-
-
-
-
-
-
-
-
-
-
L:126-382
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain L
Asymmetric Unit 1
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 10 (102 KB)
Header - Biol.Unit 10
Biol.Unit 11 (104 KB)
Header - Biol.Unit 11
Biol.Unit 12 (103 KB)
Header - Biol.Unit 12
Biol.Unit 2 (102 KB)
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Biol.Unit 3 (103 KB)
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Biol.Unit 4 (100 KB)
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Biol.Unit 5 (100 KB)
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Biol.Unit 6 (103 KB)
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Biol.Unit 7 (102 KB)
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Biol.Unit 8 (104 KB)
Header - Biol.Unit 8
Biol.Unit 9 (102 KB)
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