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4BN5
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1 (102 KB)
Biol.Unit 10 (102 KB)
Biol.Unit 11 (104 KB)
Biol.Unit 12 (103 KB)
Biol.Unit 2 (102 KB)
Biol.Unit 3 (103 KB)
Biol.Unit 4 (100 KB)
Biol.Unit 5 (100 KB)
Biol.Unit 6 (103 KB)
Biol.Unit 7 (102 KB)
Biol.Unit 8 (104 KB)
Biol.Unit 9 (102 KB)
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Title
:
STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH SRT1720 INHIBITOR
Authors
:
G. T. T. Nguyen, S. Schaefer, M. Gertz, M. Weyand, C. Steegborn
Date
:
13 May 13 (Deposition) - 26 Jun 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Keywords
:
Hydrolase, Lysine Deacetylase, Adp Ribose
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. T. T. Nguyen, S. Schaefer, M. Gertz, M. Weyand, C. Steegborn
Structures Of Human Sirtuin 3 Complexes With Adp-Ribose And With Carba-Nad+ And Srt1720: Binding Details And Inhibition Mechanism
Acta Crystallogr. , Sect. D V. 69 1423 2013
[
close entry info
]
Hetero Components
(4, 40)
Info
All Hetero Components
1a: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAa)
1b: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAb)
1c: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAc)
1d: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAd)
1e: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAe)
1f: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAf)
1g: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAg)
1h: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAh)
1i: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAi)
1j: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAj)
1k: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAk)
1l: CARBA-NICOTINAMIDE-ADENINE-DINUCLE... (CNAl)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7a)
3b: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7b)
3c: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7c)
3d: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7d)
3e: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7e)
3f: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7f)
3g: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7g)
3h: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7h)
3i: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7i)
3j: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7j)
3k: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7k)
3l: N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMID... (SR7l)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CNA
12
Ligand/Ion
CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
GOL
4
Ligand/Ion
GLYCEROL
3
SR7
12
Ligand/Ion
N-{2-[3-(PIPERAZIN-1-YLMETHYL)IMIDAZO[2,1-B][1,3]THIAZOL-6-YL]PHENYL}QUINOXALINE-2-CARBOXAMIDE
4
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:146 , GLY A:147 , SER A:149 , THR A:150 , ILE A:154 , ASP A:156 , ARG A:158 , GLN A:228 , ASN A:229 , ILE A:230 , ASP A:231 , HIS A:248 , GLY A:319 , THR A:320 , SER A:321 , VAL A:324 , ASN A:344 , ARG A:345 , ASP A:346 , GLY A:364 , ASP A:365 , VAL A:366 , SR7 A:1396
BINDING SITE FOR RESIDUE CNA A1395
02
AC2
SOFTWARE
PRO A:155 , ASP A:156 , PHE A:157 , ARG A:158 , GLU A:177 , PHE A:180 , HIS A:248 , VAL A:292 , PHE A:294 , CNA A:1395
BINDING SITE FOR RESIDUE SR7 A1396
03
AC3
SOFTWARE
CYS A:256 , CYS A:259 , CYS A:280 , CYS A:283
BINDING SITE FOR RESIDUE ZN A1397
04
AC4
SOFTWARE
ALA B:146 , GLY B:147 , SER B:149 , THR B:150 , ILE B:154 , ASP B:156 , ARG B:158 , GLN B:228 , ASN B:229 , ILE B:230 , ASP B:231 , HIS B:248 , GLY B:319 , THR B:320 , SER B:321 , ASN B:344 , ARG B:345 , ASP B:346 , GLY B:364 , VAL B:366 , SR7 B:1396
BINDING SITE FOR RESIDUE CNA B1395
05
AC5
SOFTWARE
PRO B:155 , ASP B:156 , PHE B:157 , ARG B:158 , PHE B:180 , HIS B:248 , VAL B:292 , PHE B:294 , CNA B:1395
BINDING SITE FOR RESIDUE SR7 B1396
06
AC6
SOFTWARE
CYS B:256 , CYS B:259 , CYS B:280 , CYS B:283
BINDING SITE FOR RESIDUE ZN B1397
07
AC7
SOFTWARE
ALA C:146 , GLY C:147 , THR C:150 , ILE C:154 , ASP C:156 , ARG C:158 , GLN C:228 , ILE C:230 , ASP C:231 , HIS C:248 , GLY C:319 , THR C:320 , SER C:321 , VAL C:324 , ASN C:344 , ARG C:345 , ASP C:346 , GLY C:364 , ASP C:365 , VAL C:366 , SR7 C:1397
BINDING SITE FOR RESIDUE CNA C1395
08
AC8
SOFTWARE
ARG A:301 , ARG C:301
BINDING SITE FOR RESIDUE GOL C1396
09
AC9
SOFTWARE
PRO C:155 , ASP C:156 , PHE C:157 , ARG C:158 , PHE C:180 , ILE C:230 , HIS C:248 , VAL C:292 , PHE C:294 , CNA C:1395
BINDING SITE FOR RESIDUE SR7 C1397
10
BC1
SOFTWARE
CYS C:256 , CYS C:259 , CYS C:280 , CYS C:283
BINDING SITE FOR RESIDUE ZN C1398
11
BC2
SOFTWARE
ALA D:146 , GLY D:147 , SER D:149 , THR D:150 , ILE D:154 , ASP D:156 , ARG D:158 , GLN D:228 , ASN D:229 , ILE D:230 , ASP D:231 , HIS D:248 , THR D:320 , SER D:321 , VAL D:324 , ASN D:344 , ARG D:345 , GLY D:364 , ASP D:365 , VAL D:366 , SR7 D:1396
BINDING SITE FOR RESIDUE CNA D1394
12
BC3
SOFTWARE
ARG B:301 , GLN D:300 , ARG D:301
BINDING SITE FOR RESIDUE GOL D1395
13
BC4
SOFTWARE
PRO D:155 , ASP D:156 , PHE D:157 , ARG D:158 , PHE D:180 , LEU D:199 , ILE D:230 , HIS D:248 , VAL D:292 , PHE D:293 , PHE D:294 , CNA D:1394
BINDING SITE FOR RESIDUE SR7 D1396
14
BC5
SOFTWARE
CYS D:256 , CYS D:259 , CYS D:280 , CYS D:283
BINDING SITE FOR RESIDUE ZN D1397
15
BC6
SOFTWARE
GLN D:170 , ALA E:146 , GLY E:147 , SER E:149 , THR E:150 , ASP E:156 , ARG E:158 , GLN E:228 , ASN E:229 , ILE E:230 , ASP E:231 , HIS E:248 , GLY E:319 , THR E:320 , SER E:321 , ASN E:344 , ARG E:345 , GLY E:364 , VAL E:366 , SR7 E:1396
BINDING SITE FOR RESIDUE CNA E1395
16
BC7
SOFTWARE
PRO E:155 , ASP E:156 , PHE E:157 , ARG E:158 , PHE E:180 , LEU E:199 , HIS E:248 , VAL E:292 , CNA E:1395
BINDING SITE FOR RESIDUE SR7 E1396
17
BC8
SOFTWARE
CYS E:256 , CYS E:259 , CYS E:280 , CYS E:283
BINDING SITE FOR RESIDUE ZN E1397
18
BC9
SOFTWARE
GLN B:170 , GLY F:145 , ALA F:146 , GLY F:147 , SER F:149 , THR F:150 , ASP F:156 , ARG F:158 , GLN F:228 , ASN F:229 , ILE F:230 , ASP F:231 , HIS F:248 , GLY F:319 , THR F:320 , SER F:321 , VAL F:324 , ASN F:344 , ARG F:345 , ASP F:346 , GLY F:364 , ASP F:365 , VAL F:366 , SR7 F:1396
BINDING SITE FOR RESIDUE CNA F1395
19
CC1
SOFTWARE
PRO F:155 , ASP F:156 , PHE F:157 , ARG F:158 , PHE F:180 , HIS F:248 , VAL F:292 , PHE F:294 , VAL F:324 , CNA F:1395
BINDING SITE FOR RESIDUE SR7 F1396
20
CC2
SOFTWARE
CYS F:256 , CYS F:259 , CYS F:280 , CYS F:283
BINDING SITE FOR RESIDUE ZN F1397
21
CC3
SOFTWARE
ALA G:146 , GLY G:147 , SER G:149 , THR G:150 , ASP G:156 , ARG G:158 , GLN G:228 , ASN G:229 , ILE G:230 , ASP G:231 , HIS G:248 , GLY G:319 , THR G:320 , SER G:321 , ASN G:344 , ARG G:345 , GLY G:364 , ASP G:365 , VAL G:366 , SR7 G:1396
BINDING SITE FOR RESIDUE CNA G1395
22
CC4
SOFTWARE
PHE G:157 , ARG G:158 , GLU G:177 , PHE G:180 , LEU G:195 , LEU G:199 , HIS G:248 , VAL G:292 , PHE G:294 , CNA G:1395
BINDING SITE FOR RESIDUE SR7 G1396
23
CC5
SOFTWARE
CYS G:256 , CYS G:259 , CYS G:280 , CYS G:283
BINDING SITE FOR RESIDUE ZN G1397
24
CC6
SOFTWARE
ALA H:146 , GLY H:147 , SER H:149 , THR H:150 , ASP H:156 , ARG H:158 , GLN H:228 , ASN H:229 , ILE H:230 , ASP H:231 , HIS H:248 , GLY H:319 , THR H:320 , SER H:321 , ASN H:344 , ARG H:345 , ASP H:346 , GLY H:364 , ASP H:365 , VAL H:366 , SR7 H:1396 , GLN K:170
BINDING SITE FOR RESIDUE CNA H1395
25
CC7
SOFTWARE
ASP H:156 , PHE H:157 , ARG H:158 , PHE H:180 , LEU H:195 , LEU H:199 , HIS H:248 , VAL H:292 , PHE H:294 , CNA H:1395
BINDING SITE FOR RESIDUE SR7 H1396
26
CC8
SOFTWARE
CYS H:256 , CYS H:259 , CYS H:280 , CYS H:283
BINDING SITE FOR RESIDUE ZN H1397
27
CC9
SOFTWARE
GLY I:145 , ALA I:146 , GLY I:147 , THR I:150 , ILE I:154 , ASP I:156 , ARG I:158 , GLN I:228 , ILE I:230 , ASP I:231 , HIS I:248 , GLY I:319 , THR I:320 , SER I:321 , ASN I:344 , ARG I:345 , ASP I:346 , ASP I:365 , VAL I:366 , SR7 I:1396
BINDING SITE FOR RESIDUE CNA I1395
28
DC1
SOFTWARE
PRO I:155 , ASP I:156 , PHE I:157 , ARG I:158 , PHE I:180 , LEU I:199 , HIS I:248 , VAL I:292 , PHE I:294 , CNA I:1395
BINDING SITE FOR RESIDUE SR7 I1396
29
DC2
SOFTWARE
CYS I:256 , CYS I:259 , CYS I:280 , CYS I:283
BINDING SITE FOR RESIDUE ZN I1397
30
DC3
SOFTWARE
GLN A:170 , ALA J:146 , GLY J:147 , SER J:149 , THR J:150 , ILE J:154 , ASP J:156 , ARG J:158 , GLN J:228 , ASN J:229 , ILE J:230 , ASP J:231 , HIS J:248 , GLY J:319 , THR J:320 , SER J:321 , LEU J:322 , VAL J:324 , ASN J:344 , ARG J:345 , ASP J:346 , VAL J:348 , GLY J:364 , ASP J:365 , VAL J:366 , SR7 J:1396
BINDING SITE FOR RESIDUE CNA J1395
31
DC4
SOFTWARE
PRO J:155 , ASP J:156 , PHE J:157 , ARG J:158 , PHE J:180 , HIS J:248 , VAL J:292 , PHE J:294 , CNA J:1395
BINDING SITE FOR RESIDUE SR7 J1396
32
DC5
SOFTWARE
CYS J:256 , CYS J:259 , CYS J:280 , CYS J:283
BINDING SITE FOR RESIDUE ZN J1397
33
DC6
SOFTWARE
GLY K:145 , ALA K:146 , GLY K:147 , SER K:149 , THR K:150 , ARG K:158 , GLN K:228 , ASN K:229 , ASP K:231 , HIS K:248 , THR K:320 , SER K:321 , VAL K:324 , ASN K:344 , ARG K:345 , ASP K:346 , VAL K:348 , GLY K:364 , VAL K:366 , SR7 K:1397
BINDING SITE FOR RESIDUE CNA K1395
34
DC7
SOFTWARE
ARG F:301 , ARG K:301
BINDING SITE FOR RESIDUE GOL K1396
35
DC8
SOFTWARE
PRO K:155 , ASP K:156 , PHE K:157 , ARG K:158 , GLU K:177 , PHE K:180 , LEU K:199 , ILE K:230 , HIS K:248 , VAL K:292 , PHE K:293 , PHE K:294 , CNA K:1395
BINDING SITE FOR RESIDUE SR7 K1397
36
DC9
SOFTWARE
CYS K:256 , CYS K:259 , CYS K:280 , CYS K:283
BINDING SITE FOR RESIDUE ZN K1398
37
EC1
SOFTWARE
ALA L:146 , GLY L:147 , SER L:149 , THR L:150 , ASP L:156 , GLN L:228 , ASN L:229 , ILE L:230 , ASP L:231 , HIS L:248 , THR L:320 , SER L:321 , LEU L:322 , GLU L:323 , ASN L:344 , ARG L:345 , GLY L:364 , VAL L:366 , SR7 L:1397
BINDING SITE FOR RESIDUE CNA L1395
38
EC2
SOFTWARE
ARG J:301 , ARG L:301
BINDING SITE FOR RESIDUE GOL L1396
39
EC3
SOFTWARE
PRO L:155 , ASP L:156 , PHE L:157 , ARG L:158 , PHE L:180 , ILE L:230 , HIS L:248 , VAL L:292 , PHE L:294 , CNA L:1395
BINDING SITE FOR RESIDUE SR7 L1397
40
EC4
SOFTWARE
CYS L:256 , CYS L:259 , CYS L:280 , CYS L:283
BINDING SITE FOR RESIDUE ZN L1398
[
close Site info
]
SAPs(SNPs)/Variants
(2, 24)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051978 (V208I, chain A/B/C/D/E/F/G/H/I/J/K/L, )
2: VAR_051979 (G369S, chain A/B/C/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051978
V
208
I
SIR3_HUMAN
Polymorphism
11246020
A/B/C/D/E/F/G/H/I/J/K/L
V
208
I
2
UniProt
VAR_051979
G
369
S
SIR3_HUMAN
Polymorphism
3020901
A/B/C/D/E/F/G/H/I/J/K/L
G
369
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: SIRTUIN (A:126-382,B:126-382,C:126-382,D:12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIRTUIN
PS50305
Sirtuin catalytic domain profile.
SIR3_HUMAN
126-382
12
A:126-382
B:126-382
C:126-382
D:126-382
E:126-382
F:126-382
G:126-382
H:126-382
I:126-382
J:126-382
K:126-382
L:126-382
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Info
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Sorry, no Info available
[
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (102 KB)
Header - Biol.Unit 1
Biol.Unit 10 (102 KB)
Header - Biol.Unit 10
Biol.Unit 11 (104 KB)
Header - Biol.Unit 11
Biol.Unit 12 (103 KB)
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Biol.Unit 2 (102 KB)
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