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4BMM
Asym. Unit
Info
Asym.Unit (613 KB)
Biol.Unit 1 (305 KB)
Biol.Unit 2 (303 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRYPANOSOMA CRUZI CYP51 BOUND TO THE INHIBITOR (R)-N-(3-(1H-INDOL-3-YL)-1-OXO-1-(PYRIDIN-4- YLAMINO)PROPAN-2-YL)-2',3,5'-TRIFLUORO-(1,1'-BIPHENYL)-4-CARBOXAMIDE
Authors
:
J. Y. Choi, C. M. Calvet, S. S. Gunatilleke, W. R. Roush, J. H. Mckerrow, L. M. Podust
Date
:
09 May 13 (Deposition) - 11 Jun 14 (Release) - 10 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.84
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: A,C (1x)
Keywords
:
Oxidoreductase, Sterol Biosynthesis, Chagas Disease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. M. Calvet, D. F. Vieira, J. Y. Choi, D. Kellar, M. D. Cameron, J. L. Siqueira-Neto, J. Gut, J. B. Johnston, L. Lin, S. Khan, J. H. Mckerrow, W. R. Roush, L. M. Podust
4-Aminopyridyl-Based Cyp51 Inhibitors As Anti-Trypanosoma Cruzi Drug Leads With Improved Pharmacokinetic Profile And In Vivo Potency.
J. Med. Chem. V. 57 6989 2014
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: 4-[2,5-BIS(FLUORANYL)PHENYL]-2-FLU... (TU1a)
2b: 4-[2,5-BIS(FLUORANYL)PHENYL]-2-FLU... (TU1b)
2c: 4-[2,5-BIS(FLUORANYL)PHENYL]-2-FLU... (TU1c)
2d: 4-[2,5-BIS(FLUORANYL)PHENYL]-2-FLU... (TU1d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
TU1
4
Ligand/Ion
4-[2,5-BIS(FLUORANYL)PHENYL]-2-FLUORANYL-N-[(2R)-3-(1H-INDOL-3-YL)-1-OXIDANYLIDENE-1-(PYRIDIN-4-YLAMINO)PROPAN-2-YL]BENZAMIDE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:103 , TYR A:116 , LEU A:127 , LEU A:134 , ALA A:288 , ALA A:291 , GLY A:292 , THR A:295 , THR A:299 , VAL A:359 , ARG A:361 , GLY A:414 , PHE A:415 , GLY A:416 , HIS A:420 , CYS A:422 , ILE A:423 , TU1 A:1460
BINDING SITE FOR RESIDUE HEM A1450
2
AC2
SOFTWARE
TYR A:103 , MET A:106 , PHE A:110 , TYR A:116 , PHE A:214 , ALA A:291 , LEU A:356 , MET A:358 , MET A:360 , MET A:460 , HEM A:1450 , PRO C:222
BINDING SITE FOR RESIDUE TU1 A1460
3
AC3
SOFTWARE
PHE B:90 , TYR B:103 , TYR B:116 , LEU B:134 , ALA B:288 , ALA B:291 , THR B:295 , LEU B:356 , VAL B:359 , ARG B:361 , GLY B:414 , PHE B:415 , GLY B:416 , HIS B:420 , CYS B:422 , ILE B:423 , TU1 B:1460
BINDING SITE FOR RESIDUE HEM B1450
4
AC4
SOFTWARE
TYR B:103 , MET B:106 , TYR B:116 , PRO B:210 , PHE B:214 , ALA B:291 , LEU B:356 , MET B:460 , HEM B:1450
BINDING SITE FOR RESIDUE TU1 B1460
5
AC5
SOFTWARE
TYR C:103 , ARG C:124 , LEU C:127 , ALA C:288 , ALA C:291 , GLY C:292 , THR C:295 , THR C:299 , ARG C:361 , GLY C:414 , PHE C:415 , GLY C:416 , HIS C:420 , CYS C:422 , ILE C:423 , GLY C:424 , TU1 C:1460
BINDING SITE FOR RESIDUE HEM C1450
6
AC6
SOFTWARE
TYR C:103 , MET C:106 , PHE C:110 , TYR C:116 , VAL C:213 , PHE C:214 , PHE C:290 , ALA C:291 , LEU C:356 , MET C:360 , MET C:460 , VAL C:461 , HEM C:1450
BINDING SITE FOR RESIDUE TU1 C1460
7
AC7
SOFTWARE
TYR D:103 , TYR D:116 , LEU D:134 , ALA D:288 , GLY D:292 , THR D:295 , THR D:299 , LEU D:356 , VAL D:359 , ARG D:361 , GLY D:414 , PHE D:415 , GLY D:416 , HIS D:420 , CYS D:422 , ILE D:423 , TU1 D:1460
BINDING SITE FOR RESIDUE HEM D1450
8
AC8
SOFTWARE
TYR D:103 , MET D:106 , TYR D:116 , PHE D:214 , PHE D:290 , ALA D:291 , LEU D:356 , MET D:358 , MET D:360 , MET D:460 , HEM D:1450
BINDING SITE FOR RESIDUE TU1 D1460
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SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CP51_TRYCC_001 (D62E, chain A/B/C/D, )
2: VAR_CP51_TRYCC_002 (A117S, chain A/B/C/D, )
3: VAR_CP51_TRYCC_003 (E160K, chain A/B/C/D, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CP51_TRYCC_001
*
D
62
E
CP51_TRYCC
---
---
A/B/C/D
D
62
E
2
UniProt
VAR_CP51_TRYCC_002
*
A
117
S
CP51_TRYCC
---
---
A/B/C/D
A
117
S
3
UniProt
VAR_CP51_TRYCC_003
*
E
160
K
CP51_TRYCC
---
---
A/B/C/D
E
160
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:415-424,B:415-424,C:415-424,D:41...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP51_TRYCC
415-424
4
A:415-424
B:415-424
C:415-424
D:415-424
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (613 KB)
Header - Asym.Unit
Biol.Unit 1 (305 KB)
Header - Biol.Unit 1
Biol.Unit 2 (303 KB)
Header - Biol.Unit 2
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