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4BM1
Biol. Unit 2
Info
Asym.Unit (339 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (168 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I
Authors
:
F. J. Medrano, A. Romero
Date
:
05 May 13 (Deposition) - 15 Jan 14 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Class Ii (Fungal) Peroxidases, Protoporphyrin Ix, Electron T Lignin Peroxidase, Lignin Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Fernandez-Fueyo, F. J. Ruiz-Duenas, M. J. Martinez, A. Romero, K. E. Hammel, F. J. Medrano, A. T. Martinez
Ligninolytic Peroxidase Genes In The Oyster Mushroom Genome: Heterologous Expression, Molecular Structure, Catalytic And Stability Properties, And Lignin-Degrading Ability.
Biotechnol. Biofuels V. 7 2 2014
[
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
4k: SULFATE ION (SO4k)
4l: SULFATE ION (SO4l)
4m: SULFATE ION (SO4m)
4n: SULFATE ION (SO4n)
4o: SULFATE ION (SO4o)
4p: SULFATE ION (SO4p)
4q: SULFATE ION (SO4q)
4r: SULFATE ION (SO4r)
4s: SULFATE ION (SO4s)
4t: SULFATE ION (SO4t)
4u: SULFATE ION (SO4u)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CIT
1
Ligand/Ion
CITRIC ACID
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
SO4
11
Ligand/Ion
SULFATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC4 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC2 (SOFTWARE)
11: CC3 (SOFTWARE)
12: CC4 (SOFTWARE)
13: CC6 (SOFTWARE)
14: CC7 (SOFTWARE)
15: CC8 (SOFTWARE)
16: CC9 (SOFTWARE)
17: DC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
ASP B:49 , GLY B:67 , ASP B:69 , SER B:71 , HOH B:2108 , HOH B:2120
BINDING SITE FOR RESIDUE CA B 401
02
AC5
SOFTWARE
SER B:177 , ASP B:194 , THR B:196 , ASP B:199 , ASP B:201
BINDING SITE FOR RESIDUE CA B 402
03
AC6
SOFTWARE
HIS B:40 , GLU B:41 , ARG B:44 , PHE B:47 , GLU B:147 , PRO B:148 , LEU B:172 , LEU B:173 , SER B:175 , HIS B:176 , ALA B:179 , ALA B:180 , GLN B:181 , ASP B:182 , THR B:183 , ILE B:184 , PHE B:193 , LEU B:235 , SER B:237 , MET B:269 , HOH B:2083 , HOH B:2097 , HOH B:2142
BINDING SITE FOR RESIDUE HEM B 500
04
BC4
SOFTWARE
LYS A:316 , GLY A:327 , THR A:328 , HOH A:2610 , LYS B:101
BINDING SITE FOR RESIDUE SO4 A1345
05
BC5
SOFTWARE
LYS A:281 , HOH A:2068 , ARG B:321 , PRO B:323 , HOH B:2537
BINDING SITE FOR RESIDUE SO4 B1339
06
BC6
SOFTWARE
ARG A:321 , PRO A:323 , HOH A:2576 , HOH A:2579 , LYS B:281 , HOH B:2058
BINDING SITE FOR RESIDUE SO4 A1346
07
BC7
SOFTWARE
HOH A:2251 , THR B:328 , PHE B:329 , THR B:330 , HOH B:2330 , HOH B:2500 , HOH B:2550
BINDING SITE FOR RESIDUE SO4 B1340
08
BC8
SOFTWARE
ASP B:325 , LYS B:326 , HOH B:2540
BINDING SITE FOR RESIDUE SO4 B1341
09
BC9
SOFTWARE
ALA B:303 , THR B:328 , PHE B:329 , HOH B:2501 , HOH B:2506 , HOH B:2547
BINDING SITE FOR RESIDUE SO4 B1342
10
CC2
SOFTWARE
ASN B:12 , ILE B:283 , ASP B:284 , HOH B:2024 , HOH B:2476 , HOH B:2571
BINDING SITE FOR RESIDUE SO4 B1343
11
CC3
SOFTWARE
ARG B:126 , GLU B:287 , HOH B:2480 , HOH B:2482
BINDING SITE FOR RESIDUE SO4 B1344
12
CC4
SOFTWARE
LYS A:101 , LYS B:316 , GLY B:327 , THR B:328 , HOH B:2429 , HOH B:2572 , HOH B:2573 , HOH B:2574
BINDING SITE FOR RESIDUE SO4 B1345
13
CC6
SOFTWARE
LYS B:62 , PHE B:63 , HOH B:2153 , HOH B:2576
BINDING SITE FOR RESIDUE SO4 B1346
14
CC7
SOFTWARE
ARG B:126 , HOH B:2450 , HOH B:2577 , HOH B:2578
BINDING SITE FOR RESIDUE SO4 B1347
15
CC8
SOFTWARE
GLY B:294 , ARG B:295 , HOH B:2490 , HOH B:2579
BINDING SITE FOR RESIDUE SO4 B1348
16
CC9
SOFTWARE
ARG B:295 , LYS B:297 , GLN B:298 , HOH B:2492 , HOH B:2497
BINDING SITE FOR RESIDUE SO4 B1349
17
DC1
SOFTWARE
ILE B:215 , PRO B:216 , PRO B:230 , GLY B:231 , HOH B:2354 , HOH B:2386 , HOH B:2402 , HOH B:2404 , HOH B:2580 , HOH B:2581 , HOH B:2582
BINDING SITE FOR RESIDUE CIT B1350
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4bm1a_ (A:)
1b: SCOP_d4bm1b_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
(11)
1a
d4bm1a_
A:
1b
d4bm1b_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Ligand
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
set label size to 20 (allowed range: 1-58)
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Asym.Unit (339 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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