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4BL5
Asym. Unit
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (216 KB)
Biol.Unit 2 (214 KB)
Biol.Unit 3 (217 KB)
Biol.Unit 4 (214 KB)
Biol.Unit 5 (216 KB)
Biol.Unit 6 (216 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN GDP-L-FUCOSE SYNTHASE WITH BOUND NADP AND PRODUCT GDP-L-FUCOSE
Authors
:
M. Vollmar, N. Shafqat, A. Rojkova, T. Krojer, A. Bradley, J. W. Raynor, K. Kavanagh, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann, W. W. Yue
Date
:
01 May 13 (Deposition) - 21 May 14 (Release) - 21 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: H,I (1x)
Biol. Unit 2: G,J (1x)
Biol. Unit 3: A,E (1x)
Biol. Unit 4: B,D (1x)
Biol. Unit 5: K,L (1x)
Biol. Unit 6: C,F (1x)
Keywords
:
Oxidoreductase, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vollmar, N. Shafqat, A. Rojkova, T. Krojer, A. Bradley, J. W. Raynor K. Kavanagh, F. Von Delft, C. H. Arrowsmith, C. Bountra, A. Edwards, U. Oppermann, W. W. Yue
Crystal Structure Of Human Gdp-L-Fucose Synthase With Bound Nadp And Product Gdp-L-Fucose
To Be Published
[
close entry info
]
Hetero Components
(3, 25)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
2a: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBa)
2b: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBb)
2c: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBc)
2d: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBd)
2e: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBe)
2f: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBf)
2g: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBg)
2h: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBh)
2i: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBi)
2j: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBj)
2k: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBk)
2l: GUANOSINE-5'-DIPHOSPHATE-BETA-L-FU... (GFBl)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
3c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
3d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
3e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
3f: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPf)
3g: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPg)
3h: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPh)
3i: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPi)
3j: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPj)
3k: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPk)
3l: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
2
GFB
12
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE
3
NAP
12
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:14 , GLY A:15 , SER A:16 , GLY A:17 , LEU A:18 , VAL A:19 , SER A:42 , SER A:43 , ALA A:46 , ASP A:47 , LEU A:48 , LEU A:69 , ALA A:71 , VAL A:73 , CYS A:112 , LEU A:113 , SER A:114 , TYR A:143 , LYS A:147 , PRO A:170 , THR A:171 , VAL A:173 , ARG A:320 , GFB A:902
BINDING SITE FOR RESIDUE NAP A 901
02
AC2
SOFTWARE
GLY A:74 , GLY A:75 , LEU A:76 , CYS A:116 , ASN A:140 , TYR A:143 , ASN A:172 , GLY A:185 , HIS A:186 , VAL A:187 , LYS A:194 , TRP A:208 , PRO A:213 , ARG A:215 , ILE A:252 , SER A:276 , ASP A:277 , LYS A:282 , NAP A:901
BINDING SITE FOR RESIDUE GFB A 902
03
AC3
SOFTWARE
GLY B:14 , SER B:16 , GLY B:17 , LEU B:18 , VAL B:19 , SER B:43 , ALA B:46 , ASP B:47 , LEU B:48 , LEU B:69 , ALA B:70 , ALA B:71 , VAL B:73 , CYS B:112 , LEU B:113 , SER B:114 , TYR B:143 , LYS B:147 , THR B:171 , VAL B:173 , HIS B:186 , ARG B:320 , GFB B:902
BINDING SITE FOR RESIDUE NAP B 901
04
AC4
SOFTWARE
GLY B:74 , GLY B:75 , LEU B:76 , ASN B:79 , CYS B:116 , ASN B:140 , TYR B:143 , ASN B:172 , GLY B:185 , HIS B:186 , VAL B:187 , LEU B:191 , LYS B:194 , VAL B:207 , TRP B:208 , GLY B:209 , PRO B:213 , ARG B:215 , ILE B:252 , SER B:276 , ASP B:277 , LYS B:282 , NAP B:901
BINDING SITE FOR RESIDUE GFB B 902
05
AC5
SOFTWARE
GLY C:14 , SER C:16 , GLY C:17 , LEU C:18 , VAL C:19 , SER C:43 , ALA C:46 , ASP C:47 , LEU C:48 , LEU C:69 , ALA C:70 , ALA C:71 , VAL C:73 , CYS C:112 , LEU C:113 , SER C:114 , TYR C:143 , LYS C:147 , THR C:171 , VAL C:173 , HIS C:186 , ARG C:320 , GFB C:902
BINDING SITE FOR RESIDUE NAP C 901
06
AC6
SOFTWARE
GLY C:74 , GLY C:75 , LEU C:76 , PHE C:77 , ASN C:79 , SER C:114 , CYS C:116 , ASN C:140 , TYR C:143 , ASN C:172 , GLY C:185 , HIS C:186 , VAL C:187 , LYS C:194 , VAL C:207 , TRP C:208 , ARG C:215 , ILE C:252 , SER C:276 , ASP C:277 , LYS C:282 , NAP C:901 , HOH C:2006
BINDING SITE FOR RESIDUE GFB C 902
07
AC7
SOFTWARE
GLY D:14 , GLY D:15 , SER D:16 , GLY D:17 , LEU D:18 , VAL D:19 , SER D:43 , ALA D:46 , ASP D:47 , LEU D:48 , LEU D:69 , ALA D:70 , ALA D:71 , VAL D:73 , CYS D:112 , LEU D:113 , SER D:114 , TYR D:143 , LYS D:147 , PRO D:170 , THR D:171 , VAL D:173 , HIS D:186 , ARG D:320 , GFB D:902
BINDING SITE FOR RESIDUE NAP D 901
08
AC8
SOFTWARE
GLY D:74 , GLY D:75 , LEU D:76 , SER D:114 , CYS D:116 , ASN D:140 , TYR D:143 , ASN D:172 , GLY D:185 , HIS D:186 , VAL D:187 , LYS D:194 , TRP D:208 , ARG D:215 , ILE D:252 , SER D:276 , ASP D:277 , LYS D:282 , NAP D:901
BINDING SITE FOR RESIDUE GFB D 902
09
AC9
SOFTWARE
GLY E:14 , SER E:16 , GLY E:17 , LEU E:18 , VAL E:19 , SER E:43 , ALA E:46 , ASP E:47 , LEU E:48 , LEU E:69 , ALA E:70 , ALA E:71 , VAL E:73 , MET E:93 , CYS E:112 , LEU E:113 , TYR E:143 , LYS E:147 , PRO E:170 , THR E:171 , VAL E:173 , HIS E:186 , ARG E:320 , GFB E:902
BINDING SITE FOR RESIDUE NAP E 901
10
BC1
SOFTWARE
GLY E:74 , GLY E:75 , LEU E:76 , CYS E:116 , ASN E:140 , TYR E:143 , ASN E:172 , GLY E:185 , HIS E:186 , VAL E:187 , LYS E:194 , TRP E:208 , ARG E:215 , SER E:276 , ASP E:277 , LYS E:282 , NAP E:901 , HOH E:2002
BINDING SITE FOR RESIDUE GFB E 902
11
BC2
SOFTWARE
GLY F:14 , SER F:16 , GLY F:17 , LEU F:18 , VAL F:19 , SER F:43 , ALA F:46 , ASP F:47 , LEU F:48 , THR F:49 , LEU F:69 , ALA F:70 , ALA F:71 , VAL F:73 , CYS F:112 , LEU F:113 , SER F:114 , TYR F:143 , LYS F:147 , THR F:171 , VAL F:173 , HIS F:186 , ARG F:320 , GFB F:902
BINDING SITE FOR RESIDUE NAP F 901
12
BC3
SOFTWARE
GLY F:74 , GLY F:75 , LEU F:76 , ASN F:79 , SER F:114 , CYS F:116 , ASN F:140 , TYR F:143 , ASN F:172 , GLY F:185 , HIS F:186 , VAL F:187 , LYS F:194 , TRP F:208 , GLY F:209 , ARG F:215 , ILE F:252 , SER F:276 , ASP F:277 , LYS F:282 , NAP F:901
BINDING SITE FOR RESIDUE GFB F 902
13
BC4
SOFTWARE
GLY G:14 , GLY G:15 , SER G:16 , GLY G:17 , LEU G:18 , VAL G:19 , SER G:42 , SER G:43 , ALA G:46 , ASP G:47 , LEU G:48 , LEU G:69 , ALA G:70 , ALA G:71 , VAL G:73 , CYS G:112 , LEU G:113 , SER G:114 , TYR G:143 , LYS G:147 , THR G:171 , VAL G:173 , HIS G:186 , ARG G:320 , GFB G:902
BINDING SITE FOR RESIDUE NAP G 901
14
BC5
SOFTWARE
GLY G:74 , GLY G:75 , LEU G:76 , ASN G:79 , SER G:114 , CYS G:116 , ASN G:140 , TYR G:143 , ASN G:172 , GLY G:185 , HIS G:186 , VAL G:187 , LEU G:191 , LYS G:194 , VAL G:207 , TRP G:208 , GLY G:209 , PRO G:213 , ARG G:215 , ILE G:252 , SER G:276 , ASP G:277 , LYS G:282 , NAP G:901
BINDING SITE FOR RESIDUE GFB G 902
15
BC6
SOFTWARE
GLY H:14 , SER H:16 , GLY H:17 , LEU H:18 , VAL H:19 , SER H:43 , ALA H:46 , ASP H:47 , LEU H:48 , THR H:49 , LEU H:69 , ALA H:71 , VAL H:73 , CYS H:112 , LEU H:113 , TYR H:143 , LYS H:147 , PRO H:170 , THR H:171 , VAL H:173 , HIS H:186 , ARG H:320 , GFB H:902
BINDING SITE FOR RESIDUE NAP H 901
16
BC7
SOFTWARE
GLY H:74 , GLY H:75 , LEU H:76 , PHE H:77 , ASN H:79 , CYS H:116 , ASN H:140 , TYR H:143 , ASN H:172 , GLY H:185 , HIS H:186 , VAL H:187 , LEU H:191 , LYS H:194 , VAL H:207 , TRP H:208 , GLY H:209 , PRO H:213 , ARG H:215 , ILE H:252 , SER H:276 , ASP H:277 , LYS H:282 , NAP H:901
BINDING SITE FOR RESIDUE GFB H 902
17
BC8
SOFTWARE
GLY I:14 , GLY I:15 , SER I:16 , GLY I:17 , LEU I:18 , VAL I:19 , SER I:42 , SER I:43 , ALA I:46 , ASP I:47 , LEU I:48 , LEU I:69 , ALA I:70 , ALA I:71 , VAL I:73 , MET I:93 , CYS I:112 , LEU I:113 , SER I:114 , TYR I:143 , LYS I:147 , PRO I:170 , THR I:171 , VAL I:173 , HIS I:186 , ARG I:320 , GFB I:902
BINDING SITE FOR RESIDUE NAP I 901
18
BC9
SOFTWARE
GLY I:74 , GLY I:75 , LEU I:76 , CYS I:116 , ASN I:140 , TYR I:143 , ASN I:172 , GLY I:185 , HIS I:186 , VAL I:187 , LEU I:191 , LYS I:194 , VAL I:207 , TRP I:208 , GLY I:209 , PRO I:213 , ARG I:215 , ILE I:252 , SER I:276 , ASP I:277 , LYS I:282 , NAP I:901
BINDING SITE FOR RESIDUE GFB I 902
19
CC1
SOFTWARE
GLY J:14 , GLY J:15 , SER J:16 , GLY J:17 , LEU J:18 , VAL J:19 , SER J:42 , SER J:43 , ALA J:46 , ASP J:47 , LEU J:48 , LEU J:69 , ALA J:70 , ALA J:71 , VAL J:73 , CYS J:112 , LEU J:113 , SER J:114 , TYR J:143 , LYS J:147 , PRO J:170 , THR J:171 , VAL J:173 , HIS J:186 , ARG J:320 , GFB J:902
BINDING SITE FOR RESIDUE NAP J 901
20
CC2
SOFTWARE
GLY J:74 , GLY J:75 , LEU J:76 , PHE J:77 , ASN J:79 , CYS J:116 , ASN J:140 , TYR J:143 , ASN J:172 , GLY J:185 , HIS J:186 , VAL J:187 , LYS J:194 , TRP J:208 , ARG J:215 , ILE J:252 , SER J:276 , ASP J:277 , LYS J:282 , NAP J:901
BINDING SITE FOR RESIDUE GFB J 902
21
CC3
SOFTWARE
GLY K:14 , GLY K:15 , SER K:16 , GLY K:17 , LEU K:18 , VAL K:19 , SER K:42 , SER K:43 , ALA K:46 , ASP K:47 , LEU K:48 , LEU K:69 , ALA K:70 , ALA K:71 , VAL K:73 , MET K:93 , CYS K:112 , LEU K:113 , SER K:114 , TYR K:143 , LYS K:147 , PRO K:170 , THR K:171 , VAL K:173 , HIS K:186 , ARG K:320
BINDING SITE FOR RESIDUE NAP K 901
22
CC4
SOFTWARE
GLY K:74 , GLY K:75 , LEU K:76 , ASN K:79 , CYS K:116 , ASN K:140 , TYR K:143 , ASN K:172 , GLY K:185 , HIS K:186 , VAL K:187 , LEU K:191 , LYS K:194 , VAL K:207 , TRP K:208 , PRO K:213 , ARG K:215 , ILE K:252 , SER K:276 , ASP K:277 , LYS K:282
BINDING SITE FOR RESIDUE GFB K 902
23
CC5
SOFTWARE
GLY L:14 , SER L:16 , GLY L:17 , LEU L:18 , VAL L:19 , SER L:42 , SER L:43 , ALA L:46 , ASP L:47 , LEU L:48 , LEU L:69 , ALA L:70 , ALA L:71 , VAL L:73 , MET L:93 , CYS L:112 , LEU L:113 , SER L:114 , TYR L:143 , PRO L:170 , THR L:171 , VAL L:173 , HIS L:186 , ARG L:320 , GFB L:902 , HOH L:2003
BINDING SITE FOR RESIDUE NAP L 901
24
CC6
SOFTWARE
GLY L:74 , GLY L:75 , LEU L:76 , CYS L:116 , ASN L:140 , TYR L:143 , ASN L:172 , GLY L:185 , HIS L:186 , VAL L:187 , LYS L:194 , TRP L:208 , GLY L:209 , ARG L:215 , SER L:276 , ASP L:277 , LYS L:282 , NAP L:901
BINDING SITE FOR RESIDUE GFB L 902
25
CC7
SOFTWARE
THR F:49 , THR F:51 , HIS F:92 , ASN F:96
BINDING SITE FOR RESIDUE EDO F1321
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