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Asym. Unit
Info
Asym.Unit (94 KB)
Biol.Unit 1 (172 KB)
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(1)
Title
:
THE STRUCTURE OF HDAC1 IN COMPLEX WITH THE DIMERIC ELM2-SANT DOMAIN OF MTA1 FROM THE NURD COMPLEX
Authors
:
C. J. Millard, P. J. Watson, I. Celardo, Y. Gordiyenko, S. M. Cowley, C. V. Robinson, L. Fairall, J. W. R. Schwabe
Date
:
30 Apr 13 (Deposition) - 03 Jul 13 (Release) - 31 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Transcription, Inositol Phosphate Signalling, Elm2-Sant Domain, Hdac, Hdac1, Histone Deacetylase, Mta1
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. J. Millard, P. J. Watson, I. Celardo, Y. Gordiyenko, S. M. Cowley, C. V. Robinson, L. Fairall, J. W. R. Schwabe
Class I Hdacs Share A Common Mechanism Of Regulation By Inositol Phosphates.
Mol. Cell V. 51 57 2013
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
K
2
Ligand/Ion
POTASSIUM ION
3
SO4
4
Ligand/Ion
SULFATE ION
4
ZN
1
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP B:176 , HIS B:178 , ASP B:264 , ACT B:601
BINDING SITE FOR RESIDUE ZN B 600
2
AC2
SOFTWARE
HIS B:140 , HIS B:141 , ASP B:176 , HIS B:178 , ASP B:264 , GLY B:301 , TYR B:303 , ZN B:600
BINDING SITE FOR RESIDUE ACT B 601
3
AC3
SOFTWARE
ASP B:174 , ASP B:176 , HIS B:178 , SER B:197 , PHE B:198
BINDING SITE FOR RESIDUE K B 602
4
AC4
SOFTWARE
PHE B:187 , THR B:190 , VAL B:193 , TYR B:222
BINDING SITE FOR RESIDUE K B 603
5
AC5
SOFTWARE
ARG B:270 , TYR B:303 , THR B:304 , ILE B:305 , ARG B:306
BINDING SITE FOR RESIDUE SO4 B 501
6
AC6
SOFTWARE
LYS A:305 , TYR A:327 , TYR A:328 , LYS A:331 , LYS B:31 , SO4 B:503
BINDING SITE FOR RESIDUE SO4 B 502
7
AC7
SOFTWARE
LYS A:305 , GLY B:27 , HIS B:28 , LYS B:31 , SO4 B:502
BINDING SITE FOR RESIDUE SO4 B 503
8
AC8
SOFTWARE
ARG B:55 , HIS B:57 , LYS B:58
BINDING SITE FOR RESIDUE SO4 B 504
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ELM2 (A:165-276)
2: SANT (A:283-333)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ELM2
PS51156
ELM2 domain profile.
MTA1_HUMAN
165-276
1
A:165-276
2
SANT
PS51293
SANT domain profile.
MTA1_HUMAN
283-335
1
A:283-333
[
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Exons
(11, 11)
Info
All Exons
Exon 1.1a (B:8-17)
Exon 1.2 (B:17-54)
Exon 1.3 (B:55-94)
Exon 1.4 (B:94-119)
Exon 1.5a (B:119-165)
Exon 1.5g (B:165-212)
Exon 1.6b (B:213-243)
Exon 1.7c (B:244-280)
Exon 1.8b (B:280-327)
Exon 1.9a (B:327-363)
Exon 1.10b (B:363-376)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5a
06: Boundary 1.5a/1.5g
07: Boundary 1.5g/1.6b
08: Boundary 1.6b/1.7c
09: Boundary 1.7c/1.8b
10: Boundary 1.8b/1.9a
11: Boundary 1.9a/1.10b
12: Boundary 1.10b/1.10d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000373548
1a
ENSE00001850850
chr1:
32757687-32757819
133
HDAC1_HUMAN
1-17
17
1
B:8-17
10
1.2
ENST00000373548
2
ENSE00001759703
chr1:
32768222-32768334
113
HDAC1_HUMAN
17-54
38
1
B:17-54
38
1.3
ENST00000373548
3
ENSE00000916604
chr1:
32782266-32782383
118
HDAC1_HUMAN
55-94
40
1
B:55-94
40
1.4
ENST00000373548
4
ENSE00001049603
chr1:
32790080-32790154
75
HDAC1_HUMAN
94-119
26
1
B:94-119
26
1.5a
ENST00000373548
5a
ENSE00001049601
chr1:
32792540-32792678
139
HDAC1_HUMAN
119-165
47
1
B:119-165
47
1.5g
ENST00000373548
5g
ENSE00001049604
chr1:
32793137-32793278
142
HDAC1_HUMAN
165-212
48
1
B:165-212
48
1.6b
ENST00000373548
6b
ENSE00002156228
chr1:
32794669-32794761
93
HDAC1_HUMAN
213-243
31
1
B:213-243
31
1.7c
ENST00000373548
7c
ENSE00001692609
chr1:
32796179-32796287
109
HDAC1_HUMAN
244-280
37
1
B:244-280
37
1.8b
ENST00000373548
8b
ENSE00001770293
chr1:
32796369-32796509
141
HDAC1_HUMAN
280-327
48
1
B:280-327
48
1.9a
ENST00000373548
9a
ENSE00001758736
chr1:
32797075-32797183
109
HDAC1_HUMAN
327-363
37
1
B:327-363
37
1.10b
ENST00000373548
10b
ENSE00001756323
chr1:
32797277-32797407
131
HDAC1_HUMAN
363-407
45
1
B:363-376
14
1.10d
ENST00000373548
10d
ENSE00001682220
chr1:
32797691-32797843
153
HDAC1_HUMAN
407-458
52
0
-
-
1.11
ENST00000373548
11
ENSE00001802592
chr1:
32798302-32798350
49
HDAC1_HUMAN
458-474
17
0
-
-
1.12c
ENST00000373548
12c
ENSE00001905176
chr1:
32798618-32799236
619
HDAC1_HUMAN
474-482
9
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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