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Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF HUMAN ZFYVE9
Authors
:
E. Williams, T. Krojer, M. Vollmar, L. Shrestha, F. Von Delft, C. H. Arr A. M. Edwards, C. Bountra, A. Bullock
Date
:
30 Apr 13 (Deposition) - 15 May 13 (Release) - 15 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.53
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Receptor, Protein Interaction Domain, Tgf-Beta And Egfr Signalling, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Williams
Crystal Structure Of The C-Terminal Region Of Human Zfyve9
Ph D Thesis 2013
[
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]
Hetero Components
(2, 6)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
2a: TETRAETHYLENE GLYCOL (PG4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
2
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:1103 , HIS A:1104 , GLY A:1181 , ASN A:1182 , TYR A:1183 , ILE A:1221
BINDING SITE FOR RESIDUE EDO A2366
2
AC2
SOFTWARE
ARG A:1077 , ALA A:1080 , GLU A:1081 , ASN A:1178 , GLN A:1184 , GLN A:1186
BINDING SITE FOR RESIDUE PG4 A2367
3
AC3
SOFTWARE
GLU A:1081 , TYR A:1082 , ARG A:1083
BINDING SITE FOR RESIDUE EDO A2368
4
AC4
SOFTWARE
GLY A:974 , SER A:976 , VAL A:1012
BINDING SITE FOR RESIDUE EDO A2369
5
AC5
SOFTWARE
MET A:1130 , THR A:1198
BINDING SITE FOR RESIDUE EDO A2370
6
AC6
SOFTWARE
TYR A:1040 , GLN A:1041 , LEU A:1084 , TYR A:1085 , HOH A:2052
BINDING SITE FOR RESIDUE EDO A2371
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(12, 12)
Info
All Exons
Exon 1.8 (A:895-911)
Exon 1.9 (A:917-957 (gaps))
Exon 1.10 (A:957-1009)
Exon 1.11 (A:1009-1084)
Exon 1.12 (A:1084-1111)
Exon 1.13 (A:1112-1146)
Exon 1.14 (A:1147-1197)
Exon 1.15a (A:1197-1224 (gaps))
Exon 1.16 (A:1224-1278 (gaps))
Exon 1.17 (A:1278-1313 (gaps))
Exon 1.18 (A:1314-1372 (gaps))
Exon 1.19c (A:1373-1424 (gaps))
View:
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All Exon Boundaries
01: Boundary 1.7/1.8
02: Boundary 1.8/1.9
03: Boundary 1.9/1.10
04: Boundary 1.10/1.11
05: Boundary 1.11/1.12
06: Boundary 1.12/1.13
07: Boundary 1.13/1.14
08: Boundary 1.14/1.15a
09: Boundary 1.15a/1.16
10: Boundary 1.16/1.17
11: Boundary 1.17/1.18
12: Boundary 1.18/1.19c
13: Boundary 1.19c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000371591
2b
ENSE00001455603
chr1:
52682052-52682146
95
ZFYV9_HUMAN
-
0
0
-
-
1.3
ENST00000371591
3
ENSE00001233936
chr1:
52698843-52698948
106
ZFYV9_HUMAN
1-24
24
0
-
-
1.4
ENST00000371591
4
ENSE00001140996
chr1:
52703160-52705267
2108
ZFYV9_HUMAN
24-726
703
0
-
-
1.5a
ENST00000371591
5a
ENSE00001140989
chr1:
52729445-52729544
100
ZFYV9_HUMAN
727-760
34
0
-
-
1.6
ENST00000371591
6
ENSE00001030124
chr1:
52732327-52732503
177
ZFYV9_HUMAN
760-819
60
0
-
-
1.7
ENST00000371591
7
ENSE00001030120
chr1:
52734135-52734304
170
ZFYV9_HUMAN
819-875
57
0
-
-
1.8
ENST00000371591
8
ENSE00001030105
chr1:
52740136-52740256
121
ZFYV9_HUMAN
876-916
41
1
A:895-911
17
1.9
ENST00000371591
9
ENSE00001030109
chr1:
52744164-52744286
123
ZFYV9_HUMAN
916-957
42
1
A:917-957 (gaps)
41
1.10
ENST00000371591
10
ENSE00001030112
chr1:
52747333-52747488
156
ZFYV9_HUMAN
957-1009
53
1
A:957-1009
53
1.11
ENST00000371591
11
ENSE00001064551
chr1:
52759125-52759349
225
ZFYV9_HUMAN
1009-1084
76
1
A:1009-1084
76
1.12
ENST00000371591
12
ENSE00001064557
chr1:
52761567-52761649
83
ZFYV9_HUMAN
1084-1111
28
1
A:1084-1111
28
1.13
ENST00000371591
13
ENSE00001157067
chr1:
52769493-52769597
105
ZFYV9_HUMAN
1112-1146
35
1
A:1112-1146
35
1.14
ENST00000371591
14
ENSE00001064556
chr1:
52798440-52798590
151
ZFYV9_HUMAN
1147-1197
51
1
A:1147-1197
51
1.15a
ENST00000371591
15a
ENSE00001064560
chr1:
52800360-52800440
81
ZFYV9_HUMAN
1197-1224
28
1
A:1197-1224 (gaps)
28
1.16
ENST00000371591
16
ENSE00001191836
chr1:
52803444-52803606
163
ZFYV9_HUMAN
1224-1278
55
1
A:1224-1278 (gaps)
55
1.17
ENST00000371591
17
ENSE00001191763
chr1:
52805798-52805903
106
ZFYV9_HUMAN
1278-1313
36
1
A:1278-1313 (gaps)
36
1.18
ENST00000371591
18
ENSE00001352195
chr1:
52810440-52810616
177
ZFYV9_HUMAN
1314-1372
59
1
A:1314-1372 (gaps)
59
1.19c
ENST00000371591
19c
ENSE00001455602
chr1:
52811732-52812358
627
ZFYV9_HUMAN
1373-1425
53
1
A:1373-1424 (gaps)
52
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SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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