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4BKF
Biol. Unit 1
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Asym.Unit (452 KB)
Biol.Unit 1 (442 KB)
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Title
:
CRYSTAL STRUCTURE OF THE HUMAN EPHA4 ECTODOMAIN IN COMPLEX WITH HUMAN EPHRINB3
Authors
:
E. Seiradake, A. Schaupp, D. Del Toro Ruiz, R. Kaufmann, N. Mitakidis K. Harlos, A. R. Aricescu, R. Klein, E. Y. Jones
Date
:
24 Apr 13 (Deposition) - 03 Jul 13 (Release) - 11 Nov 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transferase, Cell Adhesion, Cell Repulsion, Receptor Clustering, Receptor Cis Interaction, Erythropoetin-Producing Hepatocellular Receptor, Lbd, Sushi, Egf, Fn
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Reference
:
E. Seiradake, A. Schaupp, D. Del Toro Ruiz, R. Kaufmann, N. Mitakidis, K. Harlos, A. R. Aricescu, R. Klein, E. Y. Jones
Structurally Encoded Intraclass Differences In Epha Clusters Drive Distinct Cell Responses
Nat. Struct. Mol. Biol. V. 20 958 2013
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Hetero Components
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Sites
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_002356 (R166Q, chain C/D, )
2: VAR_042135 (R269Q, chain A/B, )
3: VAR_042136 (G370E, chain A/B, )
4: VAR_042137 (S399F, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002356
R
166
Q
EFNB3_HUMAN
Polymorphism
---
C/D
R
166
Q
2
UniProt
VAR_042135
R
269
Q
EPHA4_HUMAN
Polymorphism
35084379
A/B
R
269
Q
3
UniProt
VAR_042136
G
370
E
EPHA4_HUMAN
Unclassified
---
A/B
G
370
E
4
UniProt
VAR_042137
S
399
F
EPHA4_HUMAN
Unclassified
---
A/B
S
399
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(5, 12)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (A:30-209,B:30-209)
2: EPHRIN_RBD_1 (C:112-139,D:112-139)
3: RECEPTOR_TYR_KIN_V_1 (A:185-205,B:185-205)
4: RECEPTOR_TYR_KIN_V_2 (A:247-267,B:247-267)
5: FN3 (A:328-439,A:440-532,B:440-532)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHA4_HUMAN
30-209
2
A:30-209
B:30-209
2
EPHRIN_RBD_1
PS01299
Ephrin receptor-binding (ephrin RBD) domain signature.
EFNB3_HUMAN
112-139
2
C:112-139
D:112-139
3
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHA4_HUMAN
185-205
2
A:185-205
B:185-205
4
RECEPTOR_TYR_KIN_V_2
PS00791
Receptor tyrosine kinase class V signature 2.
EPHA4_HUMAN
247-267
2
A:247-267
B:247-267
5
FN3
PS50853
Fibronectin type-III domain profile.
EPHA4_HUMAN
328-439
440-537
4
A:328-439
B:328-439
A:440-532
B:440-532
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Asymmetric Unit 1
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Asym.Unit (452 KB)
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