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4BIO
Biol. Unit 1
Info
Asym.Unit (66 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5-CARBOXYLIC ACID
Authors
:
R. Chowdhury, C. J. Schofield
Date
:
12 Apr 13 (Deposition) - 24 Apr 13 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Dioxygenase, Oxygenase, Dna-Binding, Metal-Binding, Transcription, Helix-Loop-Helix-Beta, Dsbh, Facial Triad, Asparaginyl/Aspartyl Hydroxylase, Transcription And Epigenetic Regulation, Signaling, Development, Cell Structure, Ankyrin Repeat Domain, Ard, Beta-Hydroxylation, Transcription Activator/Inhibitor, Phosphorylation, S-Nitrosylation
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Reference
:
R. J. Hopkinson, A. Tumber, C. Yapp, R. Chowdhury, W. Aik, K. H. Che, X. S. Li, J. B. L. Kristensen, O. N. F. King, M. C. Chan, K. K. Yeoh, H. Choi L. J. Walport, C. C. Thinnes, J. T. Bush, C. Lejeune, A. M. Rydzik, N. R. Rose, E. A. Bagg, M. A. Mcdonough, T. J. Krojer, W. W. Yue, S. S. Ng, L. Olsen, P. E. Brennan, U. Oppermann, S. Muller, R. J. Klose, P. J. Ratcliffe, C. J. Schofield, A. Kawamura
8-Hydroxyquinoline-5-Carboxylic Acid Is A Broad Spectrum 2-Oxoglutarate Oxygenase Inhibitor Which Causes Iron Translocation
Chem. Rev. V. 4 3110 2013
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Hetero Components
(3, 20)
Info
All Hetero Components
1a: 8-HYDROXYQUINOLINE-5-CARBOXYLIC AC... (8XQa)
2a: FE (III) ION (FEa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
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Label:
No.
Name
Count
Type
Full Name
1
8XQ
2
Ligand/Ion
8-HYDROXYQUINOLINE-5-CARBOXYLIC ACID
2
FE
-1
Ligand/Ion
FE (III) ION
3
GOL
8
Ligand/Ion
GLYCEROL
4
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:199 , ASP A:201 , HIS A:279 , 8XQ A:601 , HOH A:2068
BINDING SITE FOR RESIDUE FE A 501
02
AC2
SOFTWARE
TYR A:102 , TYR A:145 , LEU A:188 , THR A:196 , HIS A:199 , ASP A:201 , PHE A:207 , LYS A:214 , HIS A:279 , ILE A:281 , TRP A:296 , FE A:501
BINDING SITE FOR RESIDUE 8XQ A 601
03
AC3
SOFTWARE
ARG A:138 , GLY A:140 , GLU A:141 , GLU A:142
BINDING SITE FOR RESIDUE SO4 A 701
04
AC4
SOFTWARE
LYS A:107 , ARG A:320 , LYS A:324
BINDING SITE FOR RESIDUE SO4 A 702
05
AC5
SOFTWARE
ARG A:143 , GLU A:192 , GLY A:193 , LEU A:285 , ASN A:286
BINDING SITE FOR RESIDUE SO4 A 703
06
AC6
SOFTWARE
LYS A:311 , ALA A:312 , HOH A:2081 , HOH A:2109
BINDING SITE FOR RESIDUE SO4 A 704
07
AC7
SOFTWARE
ASP A:222 , GLU A:225 , ALA A:312 , LYS A:315
BINDING SITE FOR RESIDUE SO4 A 705
08
AC8
SOFTWARE
LEU A:150 , ASN A:151
BINDING SITE FOR RESIDUE GOL A 801
09
AC9
SOFTWARE
ASP A:201 , GLN A:203 , TRP A:296 , HOH A:2072
BINDING SITE FOR RESIDUE GOL A 802
10
BC1
SOFTWARE
LYS A:99 , TYR A:230 , SER A:240 , GLN A:241 , VAL A:242 , ASP A:243
BINDING SITE FOR RESIDUE GOL A 803
11
BC2
SOFTWARE
GLN A:148 , ASN A:151
BINDING SITE FOR RESIDUE GOL A 804
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051028 (P41A, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051028
P
41
A
HIF1N_HUMAN
Polymorphism
2295778
A
P
41
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: JMJC (A:142-312)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
JMJC
PS51184
JmjC domain profile.
HIF1N_HUMAN
142-312
2
A:142-312
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4bioa_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
Double-stranded beta-helix
(580)
Superfamily
:
Clavaminate synthase-like
(197)
Family
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Protein domain
:
Hypoxia-inducible factor HIF ihhibitor (FIH1)
(26)
Human (Homo sapiens) [TaxId: 9606]
(26)
1a
d4bioa_
A:
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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