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4BH4
Asym. Unit
Info
Asym.Unit (183 KB)
Biol.Unit 1 (518 KB)
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(1)
Title
:
HAEMAGGLUTININ FROM A TRANSMISSIBLE MUTANT H5 INFLUENZA VIRUS IN COMPLEX WITH AVIAN RECEPTOR ANALOGUE 3'-SLN
Authors
:
X. Xiong, P. J. Coombs, S. R Martin, J. Liu, H. Xiao, J. W. Mccauley, K. Lo P. A. Walker, P. J. Collins, Y. Kawaoka, J. J. Skehel, S. J. Gamblin
Date
:
29 Mar 13 (Deposition) - 24 Apr 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Viral Protein, N-Glycosylation, Virus Receptor, Bird Flu
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
X. Xiong, P. J. Coombs, S. R Martin, J. Liu, H. Xiao, J. W. Mccauley, K. Locher, P. A. Walker, P. J. Collins, Y. Kawaoka, J. J. Skehel, S. J. Gamblin
Receptor Binding By A Ferret-Transmissible H5 Avian Influenza Virus
Nature V. 497 392 2013
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Hetero Components
(7, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
3a: ALPHA-L-FUCOSE (FUCa)
4a: BETA-D-GALACTOSE (GALa)
5a: ALPHA-D-MANNOSE (MANa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7a: O-SIALIC ACID (SIAa)
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No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
3
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
4
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
5
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
5
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SIA
1
Ligand/Ion
O-SIALIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:4 , TRP B:14 , HIS B:25 , ASN B:135 , HOH B:2149
BINDING SITE FOR RESIDUE EPE B1168
2
AC2
SOFTWARE
ASN A:11 , HOH A:2017
BINDING SITE FOR MONO-SACCHARIDE NAG A1323 BOUND TO ASN A 11
3
AC3
SOFTWARE
ASN A:23 , GLN A:169 , HOH A:2238 , HOH A:2239
BINDING SITE FOR MONO-SACCHARIDE NAG A1324 BOUND TO ASN A 23
4
AC4
SOFTWARE
GLU A:21 , VAL A:24 , THR A:25 , ASN A:165 , SER A:217 , ASN A:236 , ASP A:237 , ALA A:238 , ARG A:318 , ASN A:319 , PRO A:321 , HOH A:2026 , HOH A:2034 , HOH A:2036 , HOH A:2182 , HOH A:2240 , HOH A:2241 , HOH A:2243 , HOH A:2245 , GLU B:11 , GLY B:12
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1325 THROUGH FUC A1330 BOUND TO ASN A 165
5
AC5
SOFTWARE
TYR A:91 , LEU A:129 , VAL A:131 , SER A:132 , SER A:133 , HIS A:179 , GLU A:186 , LEU A:190 , GLY A:221 , HOH A:2091 , HOH A:2132 , HOH A:2134 , HOH A:2246
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A1331 THROUGH NAG A1333
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4bh4a_ (A:)
2a: SCOP_d4bh4b_ (B:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
automated matches
(43)
Influenza virus [TaxId: 284218]
(3)
1a
d4bh4a_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza virus [TaxId: 284218]
(3)
2a
d4bh4b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (183 KB)
Header - Asym.Unit
Biol.Unit 1 (518 KB)
Header - Biol.Unit 1
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