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4BH2
Biol. Unit 1
Info
Asym.Unit (179 KB)
Biol.Unit 1 (509 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HAEMAGGLUTININ FROM A TRANSMISSIBLE MUTANT H5 INFLUENZA VIRUS
Authors
:
X. Xiong, P. J. Coombs, S. R Martin, J. Liu, H. Xiao, J. W. Mccauley, K. Lo P. A. Walker, P. J. Collins, Y. Kawaoka, J. J. Skehel, S. J. Gamblin
Date
:
29 Mar 13 (Deposition) - 24 Apr 13 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.12
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Viral Protein, N-Glycosylation, Virus Receptor, Bird Flu
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Xiong, P. J. Coombs, S. R Martin, J. Liu, H. Xiao, J. W. Mccauley, K. Locher, P. A. Walker, P. J. Collins, Y. Kawaoka, J. J. Skehel, S. J. Gamblin
Receptor Binding By A Ferret-Transmissible H5 Avian Influenza Virus
Nature V. 497 392 2013
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
3a: (MANa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
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No.
Name
Count
Type
Full Name
1
BMA
6
Ligand/Ion
BETA-D-MANNOSE
2
EPE
3
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
3
MAN
3
Ligand/Ion
4
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
BMA A:1168 , TRP B:14 , HIS B:25 , ASN B:135 , CYS B:137 , HOH B:2088
BINDING SITE FOR RESIDUE EPE B1168
2
AC2
SOFTWARE
ASN A:11
BINDING SITE FOR MONO-SACCHARIDE NAG A1011 BOUND TO ASN A 11
3
AC3
SOFTWARE
ASN A:23 , GLN A:169
BINDING SITE FOR MONO-SACCHARIDE NAG A1023 BOUND TO ASN A 23
4
AC4
SOFTWARE
GLU A:21 , VAL A:24 , THR A:25 , ASN A:165 , SER A:217 , ASN A:236 , ASP A:237 , ALA A:238 , ARG A:318 , ASN A:319 , PRO A:321 , HOH A:2141 , HOH A:2142 , HOH A:2143 , HOH A:2144 , GLU B:11 , GLY B:12 , EPE B:1168
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1165 THROUGH MAN A1169 BOUND TO ASN A 165
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4bh2a_ (A:)
2a: SCOP_d4bh2b_ (B:)
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
automated matches
(43)
Influenza virus [TaxId: 284218]
(3)
1a
d4bh2a_
A:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
automated matches
(59)
Influenza virus [TaxId: 284218]
(3)
2a
d4bh2b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (509 KB)
Header - Biol.Unit 1
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