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4BGV
Asym. Unit
Info
Asym.Unit (445 KB)
Biol.Unit 1 (433 KB)
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Title
:
1.8 A RESOLUTION STRUCTURE OF THE MALATE DEHYDROGENASE FROM PICROPHILUS TORRIDUS IN ITS APO FORM
Authors
:
R. Talon, D. Madern, E. Girard
Date
:
28 Mar 13 (Deposition) - 16 Apr 14 (Release) - 01 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.81
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hyperacidophile, Oxidoreductase, Tricarboxylic Acid Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Talon, E. Girard, B. Franzetti, D. Madern
Insight Into Structural Evolution Of Extremophilic Proteins
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
2a: DI(HYDROXYETHYL)ETHER (PEGa)
2b: DI(HYDROXYETHYL)ETHER (PEGb)
2c: DI(HYDROXYETHYL)ETHER (PEGc)
2d: DI(HYDROXYETHYL)ETHER (PEGd)
2e: DI(HYDROXYETHYL)ETHER (PEGe)
2f: DI(HYDROXYETHYL)ETHER (PEGf)
2g: DI(HYDROXYETHYL)ETHER (PEGg)
2h: DI(HYDROXYETHYL)ETHER (PEGh)
2i: DI(HYDROXYETHYL)ETHER (PEGi)
2j: DI(HYDROXYETHYL)ETHER (PEGj)
2k: DI(HYDROXYETHYL)ETHER (PEGk)
3a: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-ME... (PG6a)
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No.
Name
Count
Type
Full Name
1
CIT
1
Ligand/Ion
CITRIC ACID
2
PEG
11
Ligand/Ion
DI(HYDROXYETHYL)ETHER
3
PG6
1
Ligand/Ion
1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:13 , GLY A:229 , SER A:230
BINDING SITE FOR RESIDUE PEG A1325
02
AC2
SOFTWARE
ILE A:24 , HOH A:2334 , HOH A:2335 , HOH A:2336 , ILE B:24
BINDING SITE FOR RESIDUE PEG A1326
03
AC3
SOFTWARE
GLU B:41 , GLY B:62 , PHE B:63 , LYS B:70 , HOH B:2054 , HOH B:2072 , HOH B:2073 , HOH B:2323 , ASP C:95 , ILE C:315
BINDING SITE FOR RESIDUE CIT B1325
04
AC4
SOFTWARE
TYR B:226 , GLY B:229 , SER B:230 , HOH B:2257
BINDING SITE FOR RESIDUE PEG B1326
05
AC5
SOFTWARE
PHE A:232 , HOH A:2056 , HOH A:2269 , PHE B:232
BINDING SITE FOR RESIDUE PEG B1327
06
AC6
SOFTWARE
GLU B:165 , LEU B:202 , LEU B:203 , PRO B:204 , HOH B:2324 , GLU C:300
BINDING SITE FOR RESIDUE PEG B1328
07
AC7
SOFTWARE
ASP A:201 , LEU A:203
BINDING SITE FOR RESIDUE PEG C1325
08
AC8
SOFTWARE
PRO B:198 , ASP B:201 , HOH B:2215 , HOH B:2233 , ARG C:190 , LYS C:293 , ASN C:295 , HOH C:2223 , HOH C:2305 , HOH C:2330
BINDING SITE FOR RESIDUE PG6 C1326
09
AC9
SOFTWARE
ALA C:13 , GLY C:229 , SER C:230 , PHE C:232
BINDING SITE FOR RESIDUE PEG C1327
10
BC1
SOFTWARE
HOH A:2335 , ILE C:24 , HOH C:2027 , HOH C:2331 , HOH C:2333 , ILE D:24
BINDING SITE FOR RESIDUE PEG C1328
11
BC2
SOFTWARE
LYS C:43 , PHE C:232 , HOH C:2058 , HOH C:2271 , PHE D:232 , PEG D:1326 , HOH D:2224
BINDING SITE FOR RESIDUE PEG D1325
12
BC3
SOFTWARE
TYR D:226 , GLY D:229 , SER D:230 , PEG D:1325
BINDING SITE FOR RESIDUE PEG D1326
13
BC4
SOFTWARE
ALA C:66 , HOH D:2155 , HOH D:2160 , HOH D:2225
BINDING SITE FOR RESIDUE PEG D1327
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SAPs(SNPs)/Variants
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Asym.Unit (445 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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