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4BGA
Asym. Unit
Info
Asym.Unit (214 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
NUCLEOTIDE-BOUND OPEN FORM OF A PUTATIVE SUGAR KINASE MK0840 FROM METHANOPYRUS KANDLERI
Authors
:
M. Schacherl, U. Baumann
Date
:
24 Mar 13 (Deposition) - 27 Nov 13 (Release) - 18 Dec 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Transferase, Askha Superfamily, Phosphotransfer, Pseudomurein
(Keyword Search:
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Reference
:
M. Schacherl, S. M. Waltersperger, U. Baumann
Structural Characterization Of The Ribonuclease H-Like Type Askha Superfamily Kinase Mk0840 From Methanopyrus Kandleri
Acta Crystallogr. , Sect. D V. 69 2440 2013
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Hetero Components
(5, 21)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
2a: BETA-D-GLUCOSE (BGCa)
2b: BETA-D-GLUCOSE (BGCb)
2c: BETA-D-GLUCOSE (BGCc)
2d: BETA-D-GLUCOSE (BGCd)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
5a: SUCROSE (SUCa)
5b: SUCROSE (SUCb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
4
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BGC
4
Ligand/Ion
BETA-D-GLUCOSE
3
K
8
Ligand/Ion
POTASSIUM ION
4
MG
3
Ligand/Ion
MAGNESIUM ION
5
SUC
2
Ligand/Ion
SUCROSE
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:114 , ASP A:138 , GLY A:141 , PRO A:143 , ASP A:144
BINDING SITE FOR RESIDUE K A1351
02
AC2
SOFTWARE
ASP A:138 , ALA A:142 , PHE A:182 , GLY A:183 , ALA A:185
BINDING SITE FOR RESIDUE K A1352
03
AC3
SOFTWARE
ASP B:114 , ASP B:138 , GLY B:141 , PRO B:143 , ASP B:144
BINDING SITE FOR RESIDUE K B1351
04
AC4
SOFTWARE
ASP B:138 , ALA B:142 , PHE B:182 , GLY B:183 , ALA B:185 , SER B:243
BINDING SITE FOR RESIDUE K B1352
05
AC5
SOFTWARE
ASP C:114 , ASP C:138 , GLY C:141 , PRO C:143 , ASP C:144
BINDING SITE FOR RESIDUE K C1359
06
AC6
SOFTWARE
ASP C:138 , ALA C:142 , PHE C:182 , GLY C:183 , ALA C:185
BINDING SITE FOR RESIDUE K C1360
07
AC7
SOFTWARE
ASP D:138 , ALA D:142 , PHE D:182 , GLY D:183 , ALA D:185 , SER D:243
BINDING SITE FOR RESIDUE K D1351
08
AC8
SOFTWARE
ASP D:114 , ASP D:138 , GLY D:141 , PRO D:143 , ASP D:144
BINDING SITE FOR RESIDUE K D1352
09
AC9
SOFTWARE
MET A:169 , LEU A:244 , VAL A:247 , HOH A:2019 , HOH A:2020
BINDING SITE FOR RESIDUE BGC A1353
10
BC1
SOFTWARE
MET D:169 , HOH D:2010
BINDING SITE FOR RESIDUE BGC D1353
11
BC2
SOFTWARE
ASP C:144 , MET C:169 , VAL C:187 , HOH C:2021
BINDING SITE FOR RESIDUE BGC C1361
12
BC3
SOFTWARE
ASP B:144 , MET B:169 , VAL B:187 , VAL B:247 , HOH B:2023
BINDING SITE FOR RESIDUE BGC B1353
13
BC4
SOFTWARE
ASP A:60 , TRP A:61 , GLU A:62 , ARG C:66 , GLU C:67 , GLU C:68 , ARG C:98 , ARG C:101
BINDING SITE FOR RESIDUE SUC C1362
14
BC5
SOFTWARE
ASP D:60 , TRP D:61 , GLU D:62
BINDING SITE FOR RESIDUE SUC D1354
15
BC6
SOFTWARE
ASP C:165 , ADP C:1364
BINDING SITE FOR RESIDUE MG C1363
16
BC7
SOFTWARE
ASP B:165 , ADP B:1355
BINDING SITE FOR RESIDUE MG B1354
17
BC8
SOFTWARE
ASP D:165 , ADP D:1356
BINDING SITE FOR RESIDUE MG D1355
18
BC9
SOFTWARE
ALA B:168 , THR B:191 , ASP B:195 , TYR B:206 , ASP B:207 , GLU B:208 , GLY B:209 , GLY B:298 , GLY B:299 , LYS B:301 , MG B:1354 , HOH B:2051
BINDING SITE FOR RESIDUE ADP B1355
19
CC1
SOFTWARE
THR A:48 , GLY A:167 , ALA A:168 , THR A:191 , ASP A:195 , TYR A:206 , ASP A:207 , GLU A:208 , GLY A:209 , GLY A:298 , GLY A:299 , LYS A:301 , HOH A:2058
BINDING SITE FOR RESIDUE ADP A1354
20
CC2
SOFTWARE
THR C:48 , THR C:191 , ASP C:195 , TYR C:206 , ASP C:207 , GLU C:208 , GLY C:209 , GLY C:298 , GLY C:299 , LYS C:301 , ASN C:302 , MG C:1363 , HOH C:2051
BINDING SITE FOR RESIDUE ADP C1364
21
CC3
SOFTWARE
GLY D:167 , ALA D:168 , THR D:191 , ASP D:195 , TYR D:206 , ASP D:207 , GLY D:209 , GLY D:298 , GLY D:299 , LYS D:301 , ASN D:302 , MG D:1355 , HOH D:2038
BINDING SITE FOR RESIDUE ADP D1356
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Asym.Unit (214 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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