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4BFA
Biol. Unit 2
Info
Asym.Unit (238 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (116 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI DIHYDROURIDINE SYNTHASE C (DUSC)
Authors
:
R. T. Byrne, F. Whelan, A. Konevega, N. Aziz, M. Rodnina, A. A. Antson
Date
:
16 Mar 13 (Deposition) - 06 Nov 13 (Release) - 27 May 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Oxidoreductase, Trna Modification
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Byrne, H. T. Jenkins, D. T. Peters, F. Whelan, J. Stowell, N. Aziz, P. Kasatsky, M. V. Rodnina, E. V. Koonin, A. L. Konevega, A. A. Antson
Major Reorientation Of Trna Substrates Defines Specificity Of Dihydrouridine Synthases.
Proc. Natl. Acad. Sci. Usa V. 112 6033 2015
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
3a: NITRATE ION (NO3a)
3b: NITRATE ION (NO3b)
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No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
NO3
1
Ligand/Ion
NITRATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:6 , PRO A:7 , MET A:8 , GLU A:9 , PHE A:33 , GLN A:68 , ASN A:95 , CYS A:98 , LYS A:139 , HIS A:168 , TYR A:176 , ASN A:200 , GLY A:201 , GLU A:202 , GLY A:224 , ARG A:225 , HOH A:2132 , HOH A:2215 , HOH A:2219 , ARG B:177
BINDING SITE FOR RESIDUE FMN A1316
2
AC2
SOFTWARE
ARG A:177 , ALA B:6 , PRO B:7 , MET B:8 , GLU B:9 , PHE B:33 , GLN B:68 , ASN B:95 , LYS B:139 , HIS B:168 , TYR B:176 , ASN B:200 , GLY B:201 , GLU B:202 , GLY B:224 , ARG B:225 , HOH B:2132 , HOH B:2196 , HOH B:2199
BINDING SITE FOR RESIDUE FMN B1316
3
AC3
SOFTWARE
TRP A:183 , GLN A:211 , HOH A:2196 , HOH A:2216 , HOH A:2303 , ARG B:281 , THR B:288
BINDING SITE FOR RESIDUE EDO A1317
4
AC4
SOFTWARE
ARG A:225 , ASN A:229 , TYR A:279 , LYS A:282 , HOH A:2236 , HOH A:2285 , GLU B:179
BINDING SITE FOR RESIDUE EDO A1318
5
AC5
SOFTWARE
ALA A:132 , ARG B:2 , ASP B:27 , TRP B:90
BINDING SITE FOR RESIDUE EDO B1317
6
AC6
SOFTWARE
ASP B:155 , GLN B:158 , GLN B:159 , HOH B:2306
BINDING SITE FOR RESIDUE EDO B1318
7
AC7
SOFTWARE
ASP A:182 , TRP A:183 , GLN A:184 , HOH A:2303 , HOH A:2304 , ARG B:281 , PHE B:291 , GLN B:292 , ARG B:295
BINDING SITE FOR RESIDUE NO3 A1319
8
AC8
SOFTWARE
ARG A:281 , GLN A:292 , ARG A:295 , HOH A:2289 , ILE B:181 , ASP B:182 , TRP B:183 , GLN B:184
BINDING SITE FOR RESIDUE NO3 B1319
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: UPF0034 (B:92-110)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UPF0034
PS01136
Uncharacterized protein family UPF0034 signature.
DUSC_ECOLI
92-110
1
-
B:92-110
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (238 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (116 KB)
Header - Biol.Unit 2
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