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4BF4
Asym. Unit
Info
Asym.Unit (2.1 MB)
Biol.Unit 1 (140 KB)
Biol.Unit 10 (144 KB)
Biol.Unit 11 (143 KB)
Biol.Unit 12 (144 KB)
Biol.Unit 13 (144 KB)
Biol.Unit 14 (146 KB)
Biol.Unit 15 (145 KB)
Biol.Unit 16 (146 KB)
Biol.Unit 2 (142 KB)
Biol.Unit 3 (144 KB)
Biol.Unit 4 (143 KB)
Biol.Unit 5 (142 KB)
Biol.Unit 6 (145 KB)
Biol.Unit 7 (144 KB)
Biol.Unit 8 (142 KB)
Biol.Unit 9 (144 KB)
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(1)
Title
:
PIKC D50N MUTANT IN COMPLEX WITH THE ENGINEERED CYCLOALKANE SUBSTRATE MIMIC BEARING A TERMIANL N,N-DIMETHYLAMINO GROUP
Authors
:
L. M. Podust
Date
:
14 Mar 13 (Deposition) - 26 Mar 14 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Biol. Unit 10: J (1x)
Biol. Unit 11: K (1x)
Biol. Unit 12: L (1x)
Biol. Unit 13: M (1x)
Biol. Unit 14: N (1x)
Biol. Unit 15: O (1x)
Biol. Unit 16: P (1x)
Keywords
:
Oxidoreductase, Monooxygenase, Pikromycin Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. M. Podust
Recognition Of Synthetic Substrates By P450 Pikc
To Be Published
[
close entry info
]
Hetero Components
(3, 30)
Info
All Hetero Components
1a: 1.7.6 5-CYCLODODECYLOXY-N,N-DIMETH... (17Qa)
1b: 1.7.6 5-CYCLODODECYLOXY-N,N-DIMETH... (17Qb)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
2f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
2g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
2h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
2i: PROTOPORPHYRIN IX CONTAINING FE (HEMi)
2j: PROTOPORPHYRIN IX CONTAINING FE (HEMj)
2k: PROTOPORPHYRIN IX CONTAINING FE (HEMk)
2l: PROTOPORPHYRIN IX CONTAINING FE (HEMl)
2m: PROTOPORPHYRIN IX CONTAINING FE (HEMm)
2n: PROTOPORPHYRIN IX CONTAINING FE (HEMn)
2o: PROTOPORPHYRIN IX CONTAINING FE (HEMo)
2p: PROTOPORPHYRIN IX CONTAINING FE (HEMp)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
17Q
2
Ligand/Ion
1.7.6 5-CYCLODODECYLOXY-N,N-DIMETHYL-PENTAN-1-AMINE
2
HEM
16
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:72 , MET A:92 , LEU A:93 , HIS A:100 , ARG A:104 , ALA A:243 , THR A:247 , THR A:248 , LEU A:251 , PRO A:289 , THR A:294 , ARG A:296 , ALA A:346 , PHE A:347 , GLY A:348 , ILE A:351 , HIS A:352 , CYS A:354 , ALA A:360
BINDING SITE FOR RESIDUE HEM A1407
02
AC2
SOFTWARE
ARG A:62 , HIS A:349 , ARG E:227
BINDING SITE FOR RESIDUE SO4 A1408
03
AC3
SOFTWARE
LYS B:72 , MET B:92 , LEU B:93 , HIS B:100 , ARG B:104 , PHE B:111 , ALA B:243 , GLY B:244 , THR B:247 , THR B:248 , LEU B:251 , PRO B:289 , ALA B:293 , THR B:294 , ARG B:296 , ALA B:346 , PHE B:347 , HIS B:352 , CYS B:354 , ILE B:355 , ALA B:360 , HOH B:2028
BINDING SITE FOR RESIDUE HEM B1407
04
AC4
SOFTWARE
ARG B:227 , ARG E:62
BINDING SITE FOR RESIDUE SO4 B1408
05
AC5
SOFTWARE
ARG B:62 , THR M:220 , ARG M:227
BINDING SITE FOR RESIDUE SO4 B1409
06
AC6
SOFTWARE
LYS C:72 , MET C:92 , LEU C:93 , HIS C:100 , ARG C:104 , PHE C:111 , LEU C:240 , GLY C:244 , THR C:247 , THR C:248 , LEU C:251 , PRO C:289 , ALA C:293 , THR C:294 , ARG C:296 , ALA C:346 , PHE C:347 , GLY C:348 , ILE C:351 , HIS C:352 , CYS C:354 , ILE C:355 , ALA C:360 , 17Q C:1410
BINDING SITE FOR RESIDUE HEM C1407
07
AC7
SOFTWARE
GLU C:85 , ASN C:89 , LEU C:93 , GLU C:94 , ILE C:239 , ALA C:243 , THR C:247 , HEM C:1407
BINDING SITE FOR RESIDUE 17Q C1410
08
AC8
SOFTWARE
MET D:92 , LEU D:93 , HIS D:100 , ARG D:104 , LEU D:240 , ALA D:243 , GLY D:244 , THR D:247 , LEU D:251 , PRO D:289 , VAL D:290 , ALA D:293 , THR D:294 , ARG D:296 , ALA D:346 , PHE D:347 , GLY D:348 , HIS D:352 , CYS D:354 , ILE D:355 , ALA D:360 , HOH D:2044
BINDING SITE FOR RESIDUE HEM D1407
09
AC9
SOFTWARE
THR D:341 , GLY D:343 , HIS D:344 , ARG D:361 , GLU H:223 , ASP H:224
BINDING SITE FOR RESIDUE SO4 D1408
10
BC1
SOFTWARE
MET E:92 , LEU E:93 , HIS E:100 , ARG E:104 , PHE E:111 , ALA E:243 , GLY E:244 , THR E:247 , THR E:248 , LEU E:251 , PRO E:289 , ALA E:293 , THR E:294 , ARG E:296 , ALA E:346 , PHE E:347 , ILE E:351 , HIS E:352 , CYS E:354 , ILE E:355 , ALA E:360
BINDING SITE FOR RESIDUE HEM E1407
11
BC2
SOFTWARE
LYS F:72 , MET F:92 , LEU F:93 , HIS F:100 , ARG F:104 , PHE F:111 , ALA F:243 , THR F:247 , THR F:248 , LEU F:251 , PRO F:289 , VAL F:290 , ALA F:293 , THR F:294 , ARG F:296 , ALA F:346 , PHE F:347 , GLY F:348 , ILE F:351 , HIS F:352 , CYS F:354 , ILE F:355 , GLY F:356 , ALA F:360
BINDING SITE FOR RESIDUE HEM F1407
12
BC3
SOFTWARE
ARG F:62 , HIS F:349 , THR K:220 , ARG K:227
BINDING SITE FOR RESIDUE SO4 F1408
13
BC4
SOFTWARE
MET G:92 , LEU G:93 , HIS G:100 , ARG G:104 , PHE G:111 , ALA G:243 , GLY G:244 , THR G:247 , THR G:248 , LEU G:251 , PRO G:289 , ALA G:293 , THR G:294 , ARG G:296 , ALA G:346 , PHE G:347 , ILE G:351 , HIS G:352 , CYS G:354 , ILE G:355 , ALA G:360 , 17Q G:1410
BINDING SITE FOR RESIDUE HEM G1407
14
BC5
SOFTWARE
GLU G:85 , LEU G:93 , GLU G:94 , ILE G:239 , ALA G:243 , THR G:247 , HEM G:1407
BINDING SITE FOR RESIDUE 17Q G1410
15
BC6
SOFTWARE
LYS H:72 , MET H:92 , LEU H:93 , HIS H:100 , ARG H:104 , PHE H:111 , ALA H:243 , GLY H:244 , THR H:247 , THR H:248 , LEU H:251 , PRO H:289 , ALA H:293 , THR H:294 , ARG H:296 , ALA H:346 , PHE H:347 , GLY H:348 , HIS H:352 , CYS H:354 , ILE H:355 , ALA H:360
BINDING SITE FOR RESIDUE HEM H1407
16
BC7
SOFTWARE
LEU C:106 , ARG C:227 , ARG H:62
BINDING SITE FOR RESIDUE SO4 H1408
17
BC8
SOFTWARE
ARG D:62 , THR H:220 , ARG H:227
BINDING SITE FOR RESIDUE SO4 H1409
18
BC9
SOFTWARE
MET I:92 , LEU I:93 , HIS I:100 , ARG I:104 , PHE I:111 , ALA I:243 , GLY I:244 , THR I:247 , THR I:248 , LEU I:251 , PRO I:289 , ALA I:293 , THR I:294 , ARG I:296 , ALA I:346 , PHE I:347 , GLY I:348 , HIS I:352 , CYS I:354 , ILE I:355 , GLY I:356 , ALA I:360 , HOH I:2034
BINDING SITE FOR RESIDUE HEM I1407
19
CC1
SOFTWARE
THR I:341 , ALA I:342 , GLY I:343 , HIS I:344 , GLU L:223 , ASP L:224
BINDING SITE FOR RESIDUE SO4 I1408
20
CC2
SOFTWARE
ARG I:62 , LEU L:106 , THR L:220 , ARG L:227
BINDING SITE FOR RESIDUE SO4 I1409
21
CC3
SOFTWARE
MET J:92 , LEU J:93 , HIS J:100 , ARG J:104 , PHE J:111 , ALA J:243 , GLY J:244 , THR J:247 , THR J:248 , LEU J:251 , ALA J:293 , THR J:294 , ARG J:296 , ALA J:346 , PHE J:347 , GLY J:348 , HIS J:352 , CYS J:354 , ILE J:355 , GLY J:356 , ALA J:360 , HOH J:2033
BINDING SITE FOR RESIDUE HEM J1407
22
CC4
SOFTWARE
ARG J:227 , ARG M:62
BINDING SITE FOR RESIDUE SO4 J1408
23
CC5
SOFTWARE
MET K:92 , LEU K:93 , HIS K:100 , ARG K:104 , PHE K:111 , ALA K:243 , THR K:247 , THR K:248 , LEU K:251 , PRO K:289 , ALA K:293 , THR K:294 , ARG K:296 , ALA K:346 , PHE K:347 , GLY K:348 , HIS K:352 , CYS K:354 , ILE K:355 , ALA K:360
BINDING SITE FOR RESIDUE HEM K1407
24
CC6
SOFTWARE
LYS L:72 , MET L:92 , LEU L:93 , HIS L:100 , ARG L:104 , PHE L:111 , ALA L:243 , GLY L:244 , THR L:247 , THR L:248 , LEU L:251 , ALA L:293 , THR L:294 , ARG L:296 , ALA L:346 , PHE L:347 , GLY L:348 , HIS L:352 , CYS L:354 , ILE L:355 , GLY L:356 , ALA L:360
BINDING SITE FOR RESIDUE HEM L1407
25
CC7
SOFTWARE
LYS M:72 , MET M:92 , LEU M:93 , HIS M:100 , ARG M:104 , PHE M:111 , GLY M:244 , THR M:247 , THR M:248 , PRO M:289 , THR M:294 , ARG M:296 , ALA M:346 , PHE M:347 , GLY M:348 , ILE M:351 , HIS M:352 , CYS M:354 , ILE M:355 , ALA M:360
BINDING SITE FOR RESIDUE HEM M1407
26
CC8
SOFTWARE
MET N:92 , LEU N:93 , HIS N:100 , ARG N:104 , ILE N:157 , ALA N:243 , GLY N:244 , THR N:247 , THR N:248 , LEU N:251 , ALA N:293 , THR N:294 , ARG N:296 , ALA N:346 , PHE N:347 , GLY N:348 , HIS N:352 , CYS N:354 , ILE N:355 , GLY N:356 , ALA N:360
BINDING SITE FOR RESIDUE HEM N1407
27
CC9
SOFTWARE
LYS O:72 , MET O:92 , LEU O:93 , HIS O:100 , ARG O:104 , PHE O:111 , GLY O:244 , THR O:247 , LEU O:251 , PRO O:289 , THR O:294 , ARG O:296 , ALA O:346 , PHE O:347 , GLY O:348 , HIS O:352 , CYS O:354 , GLY O:356 , ALA O:360
BINDING SITE FOR RESIDUE HEM O1407
28
DC1
SOFTWARE
ARG O:114 , ARG O:115
BINDING SITE FOR RESIDUE SO4 O1408
29
DC2
SOFTWARE
GLU G:223 , ASP G:224 , GLY O:343 , HIS O:344 , ARG O:361
BINDING SITE FOR RESIDUE SO4 O1409
30
DC3
SOFTWARE
LYS P:72 , MET P:92 , LEU P:93 , HIS P:100 , ARG P:104 , PHE P:111 , GLY P:244 , THR P:247 , THR P:248 , LEU P:251 , THR P:294 , ARG P:296 , ALA P:346 , PHE P:347 , GLY P:348 , ILE P:351 , HIS P:352 , CYS P:354 , GLY P:356 , ALA P:360
BINDING SITE FOR RESIDUE HEM P1407
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 16)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:347-356,B:347-356,C:347-356,D:34...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
PIKC_STRVZ
347-356
16
A:347-356
B:347-356
C:347-356
D:347-356
E:347-356
F:347-356
G:347-356
H:347-356
I:347-356
J:347-356
K:347-356
L:347-356
M:347-356
N:347-356
O:347-356
P:347-356
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d4bf4a_ (A:)
1b: SCOP_d4bf4b_ (B:)
1c: SCOP_d4bf4c_ (C:)
1d: SCOP_d4bf4d_ (D:)
1e: SCOP_d4bf4e_ (E:)
1f: SCOP_d4bf4f_ (F:)
1g: SCOP_d4bf4g_ (G:)
1h: SCOP_d4bf4h_ (H:)
1i: SCOP_d4bf4i_ (I:)
1j: SCOP_d4bf4j_ (J:)
1k: SCOP_d4bf4k_ (K:)
1l: SCOP_d4bf4l_ (L:)
1m: SCOP_d4bf4m_ (M:)
1n: SCOP_d4bf4n_ (N:)
1o: SCOP_d4bf4o_ (O:)
1p: SCOP_d4bf4p_ (P:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
automated matches
(157)
Protein domain
:
automated matches
(157)
Streptomyces venezuelae [TaxId: 54571]
(11)
1a
d4bf4a_
A:
1b
d4bf4b_
B:
1c
d4bf4c_
C:
1d
d4bf4d_
D:
1e
d4bf4e_
E:
1f
d4bf4f_
F:
1g
d4bf4g_
G:
1h
d4bf4h_
H:
1i
d4bf4i_
I:
1j
d4bf4j_
J:
1k
d4bf4k_
K:
1l
d4bf4l_
L:
1m
d4bf4m_
M:
1n
d4bf4n_
N:
1o
d4bf4o_
O:
1p
d4bf4p_
P:
[
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CATH Domains
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all CATH domains
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Pfam Domains
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