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4BEM
Asym. Unit
Info
Asym.Unit (311 KB)
Biol.Unit 1 (300 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE F-TYPE ATP SYNTHASE C-RING FROM ACETOBACTERIUM WOODII.
Authors
:
D. Matthies, T. Meier, O. Yildiz
Date
:
11 Mar 13 (Deposition) - 26 Mar 14 (Release) - 19 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Matthies, W. Zhou, A. L. Klyszejko, C. Anselmi, O. Yildiz, K. Brandt V. Muller, J. D. Faraldo-Gomez, T. Meier
High-Resolution Structure And Mechanism Of An F/V-Hybrid Rotor Ring In A Na+-Coupled Atp Synthase
Nat. Commun. V. 5 5286 2014
[
close entry info
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Hetero Components
(7, 46)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: N-FORMYLMETHIONINE (FMEa)
2b: N-FORMYLMETHIONINE (FMEb)
2c: N-FORMYLMETHIONINE (FMEc)
2d: N-FORMYLMETHIONINE (FMEd)
2e: N-FORMYLMETHIONINE (FMEe)
2f: N-FORMYLMETHIONINE (FMEf)
2g: N-FORMYLMETHIONINE (FMEg)
2h: N-FORMYLMETHIONINE (FMEh)
2i: N-FORMYLMETHIONINE (FMEi)
2j: N-FORMYLMETHIONINE (FMEj)
3a: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGa)
3b: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGb)
3c: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGc)
3d: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGd)
3e: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGe)
3f: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGf)
3g: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGg)
3h: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGh)
3i: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGi)
3j: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGj)
3k: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGk)
3l: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGl)
3m: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGm)
3n: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGn)
3o: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGo)
3p: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGp)
3q: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGq)
3r: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGr)
3s: HEPTYL 1-THIOHEXOPYRANOSIDE (HTGs)
4a: MANGANESE (II) ION (MNa)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
5d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
5i: SODIUM ION (NAi)
5j: SODIUM ION (NAj)
6a: HEXAETHYLENE GLYCOL (P6Ga)
7a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
FME
10
Mod. Amino Acid
N-FORMYLMETHIONINE
3
HTG
19
Ligand/Ion
HEPTYL 1-THIOHEXOPYRANOSIDE
4
MN
1
Ligand/Ion
MANGANESE (II) ION
5
NA
10
Ligand/Ion
SODIUM ION
6
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
7
TAM
1
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:29 , GLU A:62 , HOH A:2008 , VAL J:160 , THR J:163
BINDING SITE FOR RESIDUE NA A 201
02
AC2
SOFTWARE
VAL A:60 , THR A:63 , HOH A:2017 , GLN B:29 , GLU B:62
BINDING SITE FOR RESIDUE NA B 201
03
AC3
SOFTWARE
VAL B:60 , THR B:63 , HOH B:2010 , GLN C:29 , GLU C:62
BINDING SITE FOR RESIDUE NA C 201
04
AC4
SOFTWARE
VAL C:60 , THR C:63 , HOH C:2009 , GLN D:29 , GLU D:62
BINDING SITE FOR RESIDUE NA D 201
05
AC5
SOFTWARE
VAL D:60 , THR D:63 , HOH D:2010 , GLN E:29 , GLU E:62
BINDING SITE FOR RESIDUE NA E 201
06
AC6
SOFTWARE
VAL E:60 , THR E:63 , HOH E:2010 , GLN F:29 , GLU F:62
BINDING SITE FOR RESIDUE NA F 201
07
AC7
SOFTWARE
VAL F:60 , THR F:63 , HOH F:2009 , GLN G:29 , GLU G:62
BINDING SITE FOR RESIDUE NA G 201
08
AC8
SOFTWARE
VAL G:60 , THR G:63 , HOH G:2010 , GLN H:29 , GLU H:62
BINDING SITE FOR RESIDUE NA H 201
09
AC9
SOFTWARE
VAL H:60 , THR H:63 , HOH H:2015 , GLN I:29 , GLU I:62
BINDING SITE FOR RESIDUE NA I 201
10
BC1
SOFTWARE
VAL I:60 , THR I:63 , HOH I:2011 , GLN J:46 , GLU J:79
BINDING SITE FOR RESIDUE NA J 201
11
BC2
SOFTWARE
ARG D:42 , GLN D:43 , GLU D:45 , ARG E:42 , GLN E:43 , GLU E:45 , GLN I:43 , LYS J:59 , ASN J:60 , PRO J:61 , LYS J:63 , ILE J:142 , PRO J:144
BINDING SITE FOR RESIDUE P6G E1083
12
BC3
SOFTWARE
ASN G:79 , PHE G:82 , HTG G:1084 , HOH G:2015
BINDING SITE FOR RESIDUE ACT G1083
13
BC4
SOFTWARE
GLN A:47 , GLU I:2 , GLY I:3 , LEU I:4
BINDING SITE FOR RESIDUE ACT I1083
14
BC5
SOFTWARE
FME F:1
BINDING SITE FOR RESIDUE ACT F1084
15
BC6
SOFTWARE
ALA I:78 , ASN I:79 , PHE I:82 , HOH I:2013
BINDING SITE FOR RESIDUE ACT I1084
16
BC7
SOFTWARE
GLU C:2 , HOH C:2001 , FME D:1 , ASP E:49 , HOH E:2009 , GLN F:47
BINDING SITE FOR RESIDUE MN C1083
17
BC8
SOFTWARE
FME H:1 , GLU H:2 , MET J:69 , LEU J:73 , HOH J:2033
BINDING SITE FOR RESIDUE HTG J1183
18
BC9
SOFTWARE
LEU H:4 , PHE H:82 , ARG J:152 , LEU J:156 , HTG J:1185 , HTG J:1186 , HOH J:2028
BINDING SITE FOR RESIDUE HTG J1184
19
CC1
SOFTWARE
HTG H:1084 , HTG I:1086
BINDING SITE FOR RESIDUE HTG I1085
20
CC2
SOFTWARE
ILE A:51 , LEU A:55 , HTG J:1184 , HOH J:2034
BINDING SITE FOR RESIDUE HTG J1185
21
CC3
SOFTWARE
FME H:1 , LYS H:8 , HOH H:2001 , VAL J:77 , ALA J:159 , GLN J:162 , HTG J:1184
BINDING SITE FOR RESIDUE HTG J1186
22
CC4
SOFTWARE
LEU I:73 , ALA I:78 , HTG I:1085
BINDING SITE FOR RESIDUE HTG I1086
23
CC5
SOFTWARE
VAL J:87 , ILE J:91
BINDING SITE FOR RESIDUE HTG J1187
24
CC6
SOFTWARE
HTG G:1084
BINDING SITE FOR RESIDUE HTG H1083
25
CC7
SOFTWARE
ALA G:78 , ACT G:1083 , HTG H:1083
BINDING SITE FOR RESIDUE HTG G1084
26
CC8
SOFTWARE
ALA H:78 , HTG I:1085
BINDING SITE FOR RESIDUE HTG H1084
27
CC9
SOFTWARE
PHE E:77
BINDING SITE FOR RESIDUE HTG E1084
28
DC1
SOFTWARE
FME G:1 , GLY G:3 , GLU H:2 , PHE H:6 , PHE J:10 , PHE J:14
BINDING SITE FOR RESIDUE HTG J1188
29
DC2
SOFTWARE
GLU F:2 , ARG I:52 , LEU I:56
BINDING SITE FOR RESIDUE HTG I1087
30
DC3
SOFTWARE
ARG G:52
BINDING SITE FOR RESIDUE HTG G1085
31
DC4
SOFTWARE
VAL F:60 , TYR F:67 , LEU G:55 , GLU G:62
BINDING SITE FOR RESIDUE HTG G1086
32
DC5
SOFTWARE
HOH E:2014 , ARG F:52 , GLU F:62
BINDING SITE FOR RESIDUE HTG F1083
33
DC6
SOFTWARE
LYS C:8 , LEU E:56 , ILE F:51
BINDING SITE FOR RESIDUE HTG E1085
34
DC7
SOFTWARE
LEU J:182
BINDING SITE FOR RESIDUE HTG B1084
35
DC8
SOFTWARE
ARG I:52 , LEU I:56 , ASN J:65 , VAL J:68
BINDING SITE FOR RESIDUE HTG I1088
36
DC9
SOFTWARE
ASP C:49 , PRO D:44 , GLN D:47 , SER J:16 , GLN J:17 , ASP J:19 , GLU J:145
BINDING SITE FOR RESIDUE TAM C1084
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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]
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