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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
4BDS
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (189 KB)
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(1)
Title
:
HUMAN BUTYRYLCHOLINESTERASE IN COMPLEX WITH TACRINE
Authors
:
F. Nachon, E. Carletti, C. Ronco, M. Trovaslet, Y. Nicolet, L. Jean, P. -
Date
:
06 Oct 12 (Deposition) - 29 May 13 (Release) - 09 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Nerve Transmission, Inhibitior, Alpha-Beta Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Nachon, E. Carletti, C. Ronco, M. Trovaslet, Y. Nicolet, L. Jean, P. Renard
Crystal Structures Of Human Cholinesterases In Complex With Huprine W And Tacrine: Elements Of Specificity For Anti- Alzheimer'S Drugs Targeting Acetyl- And Butyrylcholinesterase.
Biochem. J. V. 453 393 2013
[
close entry info
]
Hetero Components
(9, 25)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: 1-FORMYL-L-PROLINE (FPKa)
3a: 2,6-ANHYDRO-1-DEOXY-D-GALACTITOL (FU4a)
4a: BETA-L-FUCOSE (FULa)
4b: BETA-L-FUCOSE (FULb)
5a: GLYCEROL (GOLa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
8a: TACRINE (THAa)
9a: UNKNOWN ATOM OR ION (UNXa)
9b: UNKNOWN ATOM OR ION (UNXb)
9c: UNKNOWN ATOM OR ION (UNXc)
9d: UNKNOWN ATOM OR ION (UNXd)
9e: UNKNOWN ATOM OR ION (UNXe)
9f: UNKNOWN ATOM OR ION (UNXf)
9g: UNKNOWN ATOM OR ION (UNXg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
FPK
1
Ligand/Ion
1-FORMYL-L-PROLINE
3
FU4
1
Ligand/Ion
2,6-ANHYDRO-1-DEOXY-D-GALACTITOL
4
FUL
2
Ligand/Ion
BETA-L-FUCOSE
5
GOL
1
Ligand/Ion
GLYCEROL
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
2
Ligand/Ion
SULFATE ION
8
THA
1
Ligand/Ion
TACRINE
9
UNX
7
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:188 , LYS A:190 , NAG A:611 , HOH A:2242
BINDING SITE FOR RESIDUE FU4 A 612
02
AC2
SOFTWARE
TRP A:82 , GLU A:197 , TYR A:332 , TRP A:430 , HIS A:438 , FPK A:710 , HOH A:2056 , HOH A:2093
BINDING SITE FOR RESIDUE THA A 701
03
AC3
SOFTWARE
LEU A:18 , TYR A:61 , TRP A:98 , ASP A:129 , LYS A:131
BINDING SITE FOR RESIDUE GOL A 702
04
AC4
SOFTWARE
GLN A:316 , GLY A:413 , ASN A:414 , ASN A:415 , HOH A:2216
BINDING SITE FOR RESIDUE SO4 A 703
05
AC5
SOFTWARE
TRP A:231 , ARG A:242 , SER A:287 , VAL A:288 , HOH A:2145 , HOH A:2154 , HOH A:2155
BINDING SITE FOR RESIDUE SO4 A 704
06
AC6
SOFTWARE
THR A:488 , THR A:508 , HOH A:2240
BINDING SITE FOR RESIDUE CL A 705
07
AC7
SOFTWARE
TYR A:420 , HOH A:2271
BINDING SITE FOR RESIDUE CL A 706
08
AC8
SOFTWARE
GLY A:116 , GLY A:117 , SER A:198 , ALA A:199 , LEU A:286 , HIS A:438 , THA A:701 , HOH A:2092
BINDING SITE FOR RESIDUE FPK A 710
09
AC9
SOFTWARE
ASN A:57 , HOH A:2278
BINDING SITE FOR MONO-SACCHARIDE NAG A 601 BOUND TO ASN A 57
10
BC1
SOFTWARE
ASN A:106 , ASN A:188 , LYS A:190 , FU4 A:612
BINDING SITE FOR MONO-SACCHARIDE NAG A 611 BOUND TO ASN A 106
11
BC2
SOFTWARE
TYR A:237 , ASN A:241 , ASN A:245 , LYS A:248 , LEU A:249 , PHE A:278 , PRO A:281 , HOH A:2148
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 621 THROUGH NAG A 623 BOUND TO ASN A 241
12
BC3
SOFTWARE
ASN A:256
BINDING SITE FOR MONO-SACCHARIDE NAG A 631 BOUND TO ASN A 256
13
BC4
SOFTWARE
SER A:338 , ASN A:341 , ASN A:342
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 641 THROUGH NAG A 643 BOUND TO ASN A 341
14
BC5
SOFTWARE
ARG A:465 , ASN A:485 , HOH A:2279
BINDING SITE FOR MONO-SACCHARIDE NAG A 651 BOUND TO ASN A 485
[
close Site info
]
SAPs(SNPs)/Variants
(42, 42)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_072094 (K12R, chain A, )
02: VAR_040012 (T24M, chain A, )
03: VAR_040013 (F28I, chain A, )
04: VAR_040014 (Y33C, chain A, )
05: VAR_072730 (A34V, chain A, )
06: VAR_040015 (P37S, chain A, )
07: VAR_002360 (D70G, chain A, )
08: VAR_040016 (D70H, chain A, )
09: VAR_072095 (G75R, chain A, )
10: VAR_072096 (E90D, chain A, )
11: VAR_040017 (N96Y, chain A, )
12: VAR_072097 (I99M, chain A, )
13: VAR_040018 (P100S, chain A, )
14: VAR_040019 (G115D, chain A, )
15: VAR_040020 (L125F, chain A, )
16: VAR_040021 (Y128C, chain A, )
17: VAR_040022 (V142M, chain A, )
18: VAR_040023 (D170E, chain A, )
19: VAR_040024 (S198G, chain A, )
20: VAR_040025 (A199V, chain A, )
21: VAR_040026 (A201T, chain A, )
22: VAR_072098 (V204D, chain A, )
23: VAR_040027 (T243M, chain A, )
24: VAR_040028 (T250P, chain A, )
25: VAR_040029 (E255D, chain A, )
26: VAR_040030 (K267R, chain A, )
27: VAR_072099 (V294M, chain A, )
28: VAR_040031 (L307P, chain A, )
29: VAR_040032 (A328D, chain A, )
30: VAR_002362 (L330I, chain A, )
31: VAR_072100 (G333C, chain A, )
32: VAR_040033 (G365R, chain A, )
33: VAR_040034 (R386C, chain A, )
34: VAR_040035 (G390V, chain A, )
35: VAR_040036 (F418S, chain A, )
36: VAR_040037 (E460K, chain A, )
37: VAR_072101 (R470W, chain A, )
38: VAR_040038 (W471R, chain A, )
39: VAR_040039 (F474L, chain A, )
40: VAR_040040 (E497V, chain A, )
41: VAR_040041 (R515C, chain A, )
42: VAR_040042 (Q518L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072094
K
40
R
CHLE_HUMAN
Polymorphism
116047990
A
K
12
R
02
UniProt
VAR_040012
T
52
M
CHLE_HUMAN
Disease (BChE deficiency)
56309853
A
T
24
M
03
UniProt
VAR_040013
F
56
I
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
28
I
04
UniProt
VAR_040014
Y
61
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
33
C
05
UniProt
VAR_072730
A
62
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
34
V
06
UniProt
VAR_040015
P
65
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
P
37
S
07
UniProt
VAR_002360
D
98
G
CHLE_HUMAN
Disease (BChE deficiency)
1799807
A
D
70
G
08
UniProt
VAR_040016
D
98
H
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
70
H
09
UniProt
VAR_072095
G
103
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
75
R
10
UniProt
VAR_072096
E
118
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
90
D
11
UniProt
VAR_040017
N
124
Y
CHLE_HUMAN
Disease (BChE deficiency)
---
A
N
96
Y
12
UniProt
VAR_072097
I
127
M
CHLE_HUMAN
Polymorphism
---
A
I
99
M
13
UniProt
VAR_040018
P
128
S
CHLE_HUMAN
Disease (BChE deficiency)
3732880
A
P
100
S
14
UniProt
VAR_040019
G
143
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
115
D
15
UniProt
VAR_040020
L
153
F
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
125
F
16
UniProt
VAR_040021
Y
156
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Y
128
C
17
UniProt
VAR_040022
V
170
M
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
142
M
18
UniProt
VAR_040023
D
198
E
CHLE_HUMAN
Disease (BChE deficiency)
---
A
D
170
E
19
UniProt
VAR_040024
S
226
G
CHLE_HUMAN
Disease (BChE deficiency)
---
A
S
198
G
20
UniProt
VAR_040025
A
227
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
199
V
21
UniProt
VAR_040026
A
229
T
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
201
T
22
UniProt
VAR_072098
V
232
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
V
204
D
23
UniProt
VAR_040027
T
271
M
CHLE_HUMAN
Disease (BChE deficiency)
28933389
A
T
243
M
24
UniProt
VAR_040028
T
278
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
T
250
P
25
UniProt
VAR_040029
E
283
D
CHLE_HUMAN
Polymorphism
16849700
A
E
255
D
26
UniProt
VAR_040030
K
295
R
CHLE_HUMAN
Disease (BChE deficiency)
115624085
A
K
267
R
27
UniProt
VAR_072099
V
322
M
CHLE_HUMAN
Polymorphism
---
A
V
294
M
28
UniProt
VAR_040031
L
335
P
CHLE_HUMAN
Disease (BChE deficiency)
---
A
L
307
P
29
UniProt
VAR_040032
A
356
D
CHLE_HUMAN
Disease (BChE deficiency)
---
A
A
328
D
30
UniProt
VAR_002362
L
358
I
CHLE_HUMAN
Disease (BChE deficiency)
121918557
A
L
330
I
31
UniProt
VAR_072100
G
361
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
G
333
C
32
UniProt
VAR_040033
G
393
R
CHLE_HUMAN
Disease (BChE deficiency)
115129687
A
G
365
R
33
UniProt
VAR_040034
R
414
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
386
C
34
UniProt
VAR_040035
G
418
V
CHLE_HUMAN
Disease (BChE deficiency)
28933390
A
G
390
V
35
UniProt
VAR_040036
F
446
S
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
418
S
36
UniProt
VAR_040037
E
488
K
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
460
K
37
UniProt
VAR_072101
R
498
W
CHLE_HUMAN
Polymorphism
115017300
A
R
470
W
38
UniProt
VAR_040038
W
499
R
CHLE_HUMAN
Disease (BChE deficiency)
---
A
W
471
R
39
UniProt
VAR_040039
F
502
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
F
474
L
40
UniProt
VAR_040040
E
525
V
CHLE_HUMAN
Disease (BChE deficiency)
---
A
E
497
V
41
UniProt
VAR_040041
R
543
C
CHLE_HUMAN
Disease (BChE deficiency)
---
A
R
515
C
42
UniProt
VAR_040042
Q
546
L
CHLE_HUMAN
Disease (BChE deficiency)
---
A
Q
518
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: CARBOXYLESTERASE_B_2 (A:90-100)
2: CARBOXYLESTERASE_B_1 (A:185-200)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBOXYLESTERASE_B_2
PS00941
Carboxylesterases type-B signature 2.
CHLE_HUMAN
118-128
1
A:90-100
2
CARBOXYLESTERASE_B_1
PS00122
Carboxylesterases type-B serine active site.
CHLE_HUMAN
213-228
1
A:185-200
[
close PROSITE info
]
Exons
(2, 2)
Info
All Exons
Exon 1.2 (A:4-478 (gaps))
Exon 1.4 (A:478-529)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.4
3: Boundary 1.4/1.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264381
1a
ENSE00001954521
chr3:
165555260-165555102
159
CHLE_HUMAN
-
0
0
-
-
1.2
ENST00000264381
2
ENSE00000826111
chr3:
165548829-165547305
1525
CHLE_HUMAN
1-506
506
1
A:4-478 (gaps)
475
1.4
ENST00000264381
4
ENSE00000780132
chr3:
165504099-165503933
167
CHLE_HUMAN
506-562
57
1
A:478-529
52
1.7c
ENST00000264381
7c
ENSE00001810445
chr3:
165491294-165490692
603
CHLE_HUMAN
562-602
41
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4bdsa_ (A:)
View:
Select:
Label:
Classes
(
)
(
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Folds
(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Acetylcholinesterase-like
(219)
Protein domain
:
automated matches
(91)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d4bdsa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
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Hetero
Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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