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Getting 'Biological Unit' information from database.
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4BDI
Biol. Unit 1
Info
Asym.Unit (104 KB)
Biol.Unit 1 (194 KB)
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(1)
Title
:
FRAGMENT-BASED SCREENING IDENTIFIES A NEW AREA FOR INHIBITOR BINDING TO CHECKPOINT KINASE 2 (CHK2)
Authors
:
M. C. Silva-Santisteban, I. M. Westwood, K. Boxall, N. Brown, S. Peacoc C. Mcandrew, E. Barrie, M. Richards, A. Mirza, A. W. Oliver, R. Burke, S K. Jones, G. W. Aherne, J. Blagg, I. Collins, M. D. Garrett, R. L. M. Van
Date
:
05 Oct 12 (Deposition) - 26 Jun 13 (Release) - 26 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.32
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Silva-Santisteban, I. M. Westwood, K. Boxall, N. Brown, S. Peacock, C. Mcandrew, E. Barrie, M. Richards, A. Mirza, A. W. Oliver R. Burke, S. Hoelder, K. Jones, G. W. Aherne, J. Blagg, I. Collins, M. D. Garrett, R. L. M. Van Montfort
Fragment-Based Screening Maps Inhibitor Interactions In The Atp-Binding Site Of Checkpoint Kinase 2.
Plos One V. 8 65689 2013
[
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: 1-ACETYL-N-(5-METHYLPYRIDIN-2-YL)P... (HAUa)
4a: NITRATE ION (NO3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
14
Ligand/Ion
1,2-ETHANEDIOL
3
HAU
2
Ligand/Ion
1-ACETYL-N-(5-METHYLPYRIDIN-2-YL)PIPERIDINE-4-CARBOXAMIDE
4
NO3
2
Ligand/Ion
NITRATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:226 , VAL A:234 , ALA A:247 , LEU A:301 , GLU A:302 , MET A:304 , GLU A:305 , LEU A:354
BINDING SITE FOR RESIDUE HAU A1516
02
AC2
SOFTWARE
LEU A:375 , GLY A:403 , TYR A:404 , ASN A:405 , ARG A:406
BINDING SITE FOR RESIDUE NO3 A1517
03
AC3
SOFTWARE
TYR A:212 , ARG A:406 , EDO A:1524 , HOH A:2053
BINDING SITE FOR RESIDUE CL A1518
04
AC4
SOFTWARE
ALA A:453 , GLU A:454 , SER A:456
BINDING SITE FOR RESIDUE EDO A1519
05
AC5
SOFTWARE
LYS A:465 , PHE A:475 , GLU A:479 , ARG A:482 , HIS A:483 , PRO A:484 , HOH A:2050
BINDING SITE FOR RESIDUE EDO A1520
06
AC6
SOFTWARE
GLU A:394 , VAL A:395 , HOH A:2032 , HOH A:2052
BINDING SITE FOR RESIDUE EDO A1521
07
AC7
SOFTWARE
LEU A:277 , LYS A:278 , LEU A:280 , LYS A:287 , ILE A:288
BINDING SITE FOR RESIDUE EDO A1522
08
AC8
SOFTWARE
MET A:209 , GLU A:340
BINDING SITE FOR RESIDUE EDO A1523
09
AC9
SOFTWARE
MET A:209 , SER A:210 , TYR A:212 , CL A:1518 , EDO A:1525 , HOH A:2053
BINDING SITE FOR RESIDUE EDO A1524
10
BC1
SOFTWARE
MET A:209 , GLU A:340 , EDO A:1524
BINDING SITE FOR RESIDUE EDO A1525
[
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]
SAPs(SNPs)/Variants
(18, 36)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_019106 (E239K, chain A, )
02: VAR_019111 (I251F, chain A, )
03: VAR_019112 (R318H, chain A, )
04: VAR_019113 (T323P, chain A, )
05: VAR_019114 (Y327C, chain A, )
06: VAR_029154 (D347N, chain A, )
07: VAR_066012 (H371Y, chain A, )
08: VAR_073020 (Y390C, chain A, )
09: VAR_024572 (R406H, chain A, )
10: VAR_022463 (S428F, chain A, )
11: VAR_021117 (L436M, chain A, )
12: VAR_021118 (N446K, chain A, )
13: VAR_021119 (F447I, chain A, )
14: VAR_021120 (I448S, chain A, )
15: VAR_019115 (T476K, chain A, )
16: VAR_029155 (S500C, chain A, )
17: VAR_021121 (E501K, chain A, )
18: VAR_021122 (L512V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019106
E
239
K
CHK2_HUMAN
Disease (PC)
---
A
E
239
K
02
UniProt
VAR_019111
I
251
F
CHK2_HUMAN
Disease (PC)
---
A
I
251
F
03
UniProt
VAR_019112
R
318
H
CHK2_HUMAN
Disease (PC)
143611747
A
R
318
H
04
UniProt
VAR_019113
T
323
P
CHK2_HUMAN
Disease (PC)
---
A
T
323
P
05
UniProt
VAR_019114
Y
327
C
CHK2_HUMAN
Disease (PC)
---
A
Y
327
C
06
UniProt
VAR_029154
D
347
N
CHK2_HUMAN
Polymorphism
28909980
A
D
347
N
07
UniProt
VAR_066012
H
371
Y
CHK2_HUMAN
Unclassified
---
A
H
371
Y
08
UniProt
VAR_073020
Y
390
C
CHK2_HUMAN
Disease (BC)
---
A
Y
390
C
09
UniProt
VAR_024572
R
406
H
CHK2_HUMAN
Polymorphism
299671
A
R
406
H
10
UniProt
VAR_022463
S
428
F
CHK2_HUMAN
Polymorphism
137853011
A
S
428
F
11
UniProt
VAR_021117
L
436
M
CHK2_HUMAN
Polymorphism
17882922
A
L
436
M
12
UniProt
VAR_021118
N
446
K
CHK2_HUMAN
Polymorphism
17880867
A
N
446
K
13
UniProt
VAR_021119
F
447
I
CHK2_HUMAN
Polymorphism
17881473
A
F
447
I
14
UniProt
VAR_021120
I
448
S
CHK2_HUMAN
Polymorphism
17886163
A
I
448
S
15
UniProt
VAR_019115
T
476
K
CHK2_HUMAN
Disease (PC)
---
A
T
476
K
16
UniProt
VAR_029155
S
500
C
CHK2_HUMAN
Polymorphism
28909981
A
S
500
C
17
UniProt
VAR_021121
E
501
K
CHK2_HUMAN
Polymorphism
17883172
A
E
501
K
18
UniProt
VAR_021122
L
512
V
CHK2_HUMAN
Polymorphism
17882942
A
L
512
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ST (A:343-355)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CHK2_HUMAN
343-355
2
A:343-355
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4bdia_ (A:)
View:
Select:
Label:
Classes
(
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(
)
Folds
(
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(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d4bdia_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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select residue range 5 to 10 in all chains
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