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4BCR
Asym. Unit
Info
Asym.Unit (181 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
STRUCTURE OF PPARALPHA IN COMPLEX WITH WY14643
Authors
:
A. Bernardes, J. R. C. Muniz, I. Polikarpov
Date
:
02 Oct 12 (Deposition) - 29 May 13 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transcription, Nuclear Receptor, Ppar, Fibrate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Bernardes, P. C. T Souza, J. R. C. Muniz, C. G. Ricci, S. D. Ayers, N. M. Parekh, A. S. Godoy, D. B. B. Trivella, P. Reinach, P. Webb, M. S. Skaf, I. Polikarpov
Molecular Mechanism Of Peroxisome Proliferator-Activated Receptor Alpha Activation By Wy14643: A New Mode Of Ligand Recognition And Receptor Stabilization
J. Mol. Biol. V. 425 2878 2013
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENY... (WY1a)
2b: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENY... (WY1b)
2c: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENY... (WY1c)
2d: 2-({4-CHLORO-6-[(2,3-DIMETHYLPHENY... (WY1d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
WY1
4
Ligand/Ion
2-({4-CHLORO-6-[(2,3-DIMETHYLPHENYL)AMINO]PYRIMIDIN-2-YL}SULFANYL)ACETIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:238 , PHE A:338
BINDING SITE FOR RESIDUE EDO A1467
2
AC2
SOFTWARE
CYS A:276 , THR A:279 , SER A:280 , THR A:283 , TYR A:314 , ILE A:317 , PHE A:318 , LEU A:321 , MET A:330 , ILE A:354 , MET A:355 , LYS A:358 , HIS A:440 , TYR A:464
BINDING SITE FOR RESIDUE WY1 A1468
3
AC3
SOFTWARE
GLU A:251 , VAL A:255 , LEU A:258 , LYS A:266 , ARG A:271 , ILE A:272 , HIS A:274 , CYS A:275 , CYS A:278 , PHE A:421
BINDING SITE FOR RESIDUE WY1 A1469
4
AC4
SOFTWARE
CYS B:276 , GLN B:277 , THR B:279 , SER B:280 , THR B:283 , TYR B:314 , PHE B:318 , MET B:330 , MET B:355 , LYS B:358 , HIS B:440 , LEU B:460 , TYR B:464
BINDING SITE FOR RESIDUE WY1 B1468
5
AC5
SOFTWARE
GLU B:251 , LYS B:266 , ARG B:271 , ILE B:272 , HIS B:274 , CYS B:275 , CYS B:278 , ILE B:339
BINDING SITE FOR RESIDUE WY1 B1470
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SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016112 (V227A, chain A/B, )
2: VAR_016113 (A268V, chain A/B, )
3: VAR_016114 (D304N, chain A/B, )
4: VAR_050578 (G395R, chain A/B, )
5: VAR_016115 (R409T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016112
V
227
A
PPARA_HUMAN
Polymorphism
1800234
A/B
V
227
A
2
UniProt
VAR_016113
A
268
V
PPARA_HUMAN
Polymorphism
1042311
A/B
A
268
V
3
UniProt
VAR_016114
D
304
N
PPARA_HUMAN
Polymorphism
1800242
A/B
D
304
N
4
UniProt
VAR_050578
G
395
R
PPARA_HUMAN
Polymorphism
2229245
A/B
G
395
R
5
UniProt
VAR_016115
R
409
T
PPARA_HUMAN
Polymorphism
1800243
A/B
R
409
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(3, 6)
Info
All Exons
Exon 1.12a (A:204-237 | B:196-230)
Exon 1.13 (A:238-387 | B:238-387)
Exon 1.14c (A:387-466 | B:387-467)
View:
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All Exon Boundaries
1: Boundary 1.11/1.12a
2: Boundary 1.12a/1.13
3: Boundary 1.13/1.14c
4: Boundary 1.14c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000262735
1c
ENSE00001411734
chr22:
46546499-46546555
57
PPARA_HUMAN
-
0
0
-
-
1.3c
ENST00000262735
3c
ENSE00001046654
chr22:
46547791-46547873
83
PPARA_HUMAN
-
0
0
-
-
1.9b
ENST00000262735
9b
ENSE00001434891
chr22:
46594239-46594488
250
PPARA_HUMAN
1-70
70
0
-
-
1.10a
ENST00000262735
10a
ENSE00000657264
chr22:
46611070-46611230
161
PPARA_HUMAN
70-123
54
0
-
-
1.11
ENST00000262735
11
ENSE00000657266
chr22:
46614160-46614298
139
PPARA_HUMAN
124-170
47
0
-
-
1.12a
ENST00000262735
12a
ENSE00000657268
chr22:
46615709-46615911
203
PPARA_HUMAN
170-237
68
2
A:204-237
B:196-230
34
35
1.13
ENST00000262735
13
ENSE00000657269
chr22:
46627689-46628136
448
PPARA_HUMAN
238-387
150
2
A:238-387
B:238-387
150
150
1.14c
ENST00000262735
14c
ENSE00000880791
chr22:
46631030-46639653
8624
PPARA_HUMAN
387-468
82
2
A:387-466
B:387-467
80
81
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4bcra_ (A:)
1b: SCOP_d4bcrb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor alpha, PPAR-alpha
(14)
Human (Homo sapiens) [TaxId: 9606]
(14)
1a
d4bcra_
A:
1b
d4bcrb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (181 KB)
Header - Asym.Unit
Biol.Unit 1 (88 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
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