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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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4BCD
Asym. Unit
Info
Asym.Unit (254 KB)
Biol.Unit 1 (248 KB)
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(1)
Title
:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A NON-COVALENTLY BOUND P2-SUBSTITUTED N-ACYL-PROLYLPYRROLIDINE INHIBITOR
Authors
:
P. Vanderveken, V. Fulop, D. Rea, M. Gerard, R. Vanelzen, J. Joossens, J V. Baekelandt, I. Demeester, A. M. Lambeir, K. Augustyns
Date
:
01 Oct 12 (Deposition) - 13 Mar 13 (Release) - 01 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Beta-Hydrolase, Amnesia, Hydrolase, Parkinsons Disease, Alzheimers Disease, Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Van Der Veken, V. Fulop, D. Rea, M. Gerard, R. Van Elzen, J. Joossens, J. D. Cheng, V. Baekelandt, I. De Meester, A. M. Lambeir, K. Augustyns
P2-Substituted N-Acylprolylpyrrolidine Inhibitors Of Prolyl Oligopeptidase: Biochemical Evaluation, Binding Mode Determination, And Assessment In A Cellular Model Of Synucleinopathy.
J. Med. Chem. V. 55 9856 2012
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
2a: TRIS(HYDROXYETHYL)AMINOMETHANE (TAMa)
3a: 1-[(2S,4S)-4-[4-(4-FLUOROPHENYL)-1... (TDVa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
TAM
1
Ligand/Ion
TRIS(HYDROXYETHYL)AMINOMETHANE
3
TDV
1
Ligand/Ion
1-[(2S,4S)-4-[4-(4-FLUOROPHENYL)-1,2,3-TRIAZOL-1-YL]-2-PYRROLIDIN-1-YLCARBONYL-PYRROLIDIN-1-YL]-4-PHENYL-BUTAN-1-ONE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:173 , GLY A:254 , PHE A:476 , ILE A:478 , SER A:554 , VAL A:580 , ILE A:591 , TRP A:595 , ARG A:643 , VAL A:644
BINDING SITE FOR RESIDUE TDV A 791
02
AC2
SOFTWARE
ILE A:118 , LEU A:119 , SER A:120 , ASP A:121 , LYS A:445 , ASP A:446 , ASN A:522 , ASN A:525 , HOH A:2118 , HOH A:2291 , HOH A:2757 , HOH A:2814 , HOH A:2956
BINDING SITE FOR RESIDUE TAM A1711
03
AC3
SOFTWARE
LYS A:48 , GLU A:323 , SER A:324 , TRP A:326 , HOH A:2623 , HOH A:2640
BINDING SITE FOR RESIDUE GOL A1712
04
AC4
SOFTWARE
ALA A:226 , GLU A:227 , PHE A:228 , ILE A:276 , LYS A:281 , HOH A:2957 , HOH A:2958
BINDING SITE FOR RESIDUE GOL A1713
05
AC5
SOFTWARE
GLY A:553 , HIS A:680 , HOH A:2959
BINDING SITE FOR RESIDUE GOL A1714
06
AC6
SOFTWARE
PRO A:568 , ASP A:569 , PHE A:571 , ILE A:628 , GLN A:629 , PRO A:631 , ASN A:668 , HOH A:2831 , HOH A:2917
BINDING SITE FOR RESIDUE GOL A1715
07
AC7
SOFTWARE
GLU A:239 , ASP A:291 , TYR A:292 , HOH A:2511 , HOH A:2518 , HOH A:2532 , HOH A:2593 , HOH A:2594 , HOH A:2596
BINDING SITE FOR RESIDUE GOL A1716
08
AC8
SOFTWARE
VAL A:341 , HOH A:2594 , HOH A:2595 , HOH A:2596 , HOH A:2961
BINDING SITE FOR RESIDUE GOL A1717
09
AC9
SOFTWARE
ASP A:8 , VAL A:9 , TRP A:30 , GLN A:38 , ALA A:41 , PHE A:42 , HOH A:2033 , HOH A:2417 , HOH A:2963
BINDING SITE FOR RESIDUE GOL A1718
10
BC1
SOFTWARE
GLU A:287 , ASN A:305 , GLU A:512 , LYS A:516 , HOH A:2545 , HOH A:2584 , HOH A:2608 , HOH A:2609
BINDING SITE FOR RESIDUE GOL A1719
11
BC2
SOFTWARE
GLN A:193 , THR A:204 , ASN A:205 , LEU A:206
BINDING SITE FOR RESIDUE GOL A1720
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PPCE_PIG_001 (A29H, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PPCE_PIG_001
*
A
29
H
PPCE_PIG
---
---
A
A
29
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PRO_ENDOPEP_SER (A:529-559)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
PPCE_PIG
529-559
1
A:529-559
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4bcda1 (A:1-430)
2a: SCOP_d4bcda2 (A:431-710)
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Classes
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Peptidase/esterase 'gauge' domain
(47)
Family
:
Prolyl oligopeptidase, N-terminal domain
(29)
Protein domain
:
Prolyl oligopeptidase, N-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
1a
d4bcda1
A:1-430
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Prolyl oligopeptidase, C-terminal domain
(28)
Protein domain
:
Prolyl oligopeptidase, C-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
2a
d4bcda2
A:431-710
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (254 KB)
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Header - Biol.Unit 1
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