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4BB6
Asym. Unit
Info
Asym.Unit (176 KB)
Biol.Unit 1 (170 KB)
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(1)
Title
:
FREE-WILSON AND STRUCTURAL APPROACHES TO CO-OPTIMISING HUMAN AND RODENT ISOFORM POTENCY FOR 11B-HYDROXYSTEROID DEHYDROGENASE TYPE 1 11B-HSD1 INHIBITORS
Authors
:
F. W. Goldberg, A. G. Leach, J. S. Scott, W. L. Snelson, S. D. Groombridge C. S. Donald, S. N. L. Bennett, C. Bodin, P. Morentin Gutierrez, A. C. G
Date
:
20 Sep 12 (Deposition) - 28 Nov 12 (Release) - 26 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Bhsd
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. W. Goldberg, A. G. Leach, J. S. Scott, W. L. Snelson, S. D. Groombridge, C. S. Donald, S. N. L. Bennett, C. Bodin, P. Morentin Gutierrez, A. C. Gyte
Free-Wilson And Structural Approaches To Co- Optimising Human And Rodent Isoform Potency For 11Beta-Hydroxysteroid Dehydrogenase Type 1 (11Beta-Hsd1) Inhibitors
J. Med. Chem. V. 55 10652 2012
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 6-(4-METHYLPIPERAZIN-1-YL)-N-[(1R,... (HD1a)
2b: 6-(4-METHYLPIPERAZIN-1-YL)-N-[(1R,... (HD1b)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
HD1
2
Ligand/Ion
6-(4-METHYLPIPERAZIN-1-YL)-N-[(1R,3S)-5-OXIDANYL-2-ADAMANTYL]-2-PROPYLSULFANYL-PYRIDINE-3-CARBOXAMIDE
3
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:41 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ARG A:66 , SER A:67 , GLY A:91 , THR A:92 , MET A:93 , ASN A:119 , HIS A:120 , ILE A:121 , VAL A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , HD1 A:1293
BINDING SITE FOR RESIDUE NAP A1292
2
AC2
SOFTWARE
ILE A:121 , LEU A:126 , SER A:170 , TYR A:183 , LEU A:217 , MET A:233 , NAP A:1292 , TYR B:280
BINDING SITE FOR RESIDUE HD1 A1293
3
AC3
SOFTWARE
GLU A:221
BINDING SITE FOR RESIDUE CL A1294
4
AC4
SOFTWARE
GLY B:41 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , HIS B:120 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , LEU B:217 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , HD1 B:1285
BINDING SITE FOR RESIDUE NAP B1284
5
AC5
SOFTWARE
TYR A:280 , ILE B:121 , SER B:170 , LEU B:171 , TYR B:177 , TYR B:183 , THR B:222 , NAP B:1284
BINDING SITE FOR RESIDUE HD1 B1285
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035845 (V148E, chain A/B, )
2: VAR_DHI1_HUMAN_CCDS1489_1_01 (V148E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035845
V
148
E
DHI1_HUMAN
Unclassified
---
A/B
V
148
E
2
CancerSNP
VAR_DHI1_HUMAN_CCDS1489_1_01
*
V
148
E
DHI1_HUMAN
Disease (Breast cancer)
---
A/B
V
148
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:170-198,B:170-198)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHI1_HUMAN
170-198
2
A:170-198
B:170-198
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Exons
(6, 12)
Info
All Exons
Exon 1.2b (A:26-30 | B:26-30)
Exon 1.3 (A:30-73 | B:30-73)
Exon 1.4 (A:74-111 | B:74-111)
Exon 1.5 (A:111-173 | B:111-173)
Exon 1.6 (A:173-221 | B:173-221)
Exon 1.7a (A:221-291 | B:221-283)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367028
1a
ENSE00001443288
chr1:
209859510-209859630
121
DHI1_HUMAN
-
0
0
-
-
1.2b
ENST00000367028
2b
ENSE00001443287
chr1:
209878240-209878375
136
DHI1_HUMAN
1-30
30
2
A:26-30
B:26-30
5
5
1.3
ENST00000367028
3
ENSE00000792110
chr1:
209879156-209879286
131
DHI1_HUMAN
30-73
44
2
A:30-73
B:30-73
44
44
1.4
ENST00000367028
4
ENSE00000792111
chr1:
209880054-209880165
112
DHI1_HUMAN
74-111
38
2
A:74-111
B:74-111
38
38
1.5
ENST00000367028
5
ENSE00000792112
chr1:
209880288-209880473
186
DHI1_HUMAN
111-173
63
2
A:111-173
B:111-173
63
63
1.6
ENST00000367028
6
ENSE00000792113
chr1:
209905781-209905924
144
DHI1_HUMAN
173-221
49
2
A:173-221
B:173-221
49
49
1.7a
ENST00000367028
7a
ENSE00001443286
chr1:
209907649-209908209
561
DHI1_HUMAN
221-292
72
2
A:221-291
B:221-283
71
63
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4bb6a_ (A:)
1b: SCOP_d4bb6b_ (B:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d4bb6a_
A:
1b
d4bb6b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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Asym.Unit (176 KB)
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