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4BAE
Asym. Unit
Info
Asym.Unit (248 KB)
Biol.Unit 1 (120 KB)
Biol.Unit 2 (124 KB)
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(1)
Title
:
OPTIMISATION OF PYRROLEAMIDES AS MYCOBACTERIAL GYRB ATPASE INHIBITORS: STRUCTURE ACTIVITY RELATIONSHIP AND IN VIVO EFFICACY IN THE MOUSE MODEL OF TUBERCULOSIS
Authors
:
J. A. Read, H. G. Gingell, P. Madhavapeddi
Date
:
13 Sep 12 (Deposition) - 30 Oct 13 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Isomerase, Dna Topoisomerase, Inhibitor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. P. Hameed, S. Solapure, K. Mukherjee, V. Nandi, D. Waterson, R. Shandil, M. Balganesh, V. K. Sambandamurthy, A. K. Raichurkar, A. Deshpande, A. Ghosh, D. Awasthy, G. Shanbhag, G. Sheikh, H. Mcmiken J. Puttur, J. Reddy, J. Werngren, J. Read, M. Kumar, R. Manjunatha, M. Chinnapattu, P. Madhavapeddi, P. Manjrekar, R. Basu, S. Gaonkar, S. Sharma, S. Hoffner, V. Humnabadkar, V. Subbulakshmi, V. Panduga
Optimization Of Pyrrolamides As Mycobacterial Gyrb Atpase Inhibitors: Structure Activity Relationship And In Vivo Efficacy In The Mouse Model Of Tuberculosis.
Antimicrob. Agents Chemother. V. 58 61 2014
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: 2-[(3S,4R)-4-[(3-BROMANYL-4-CHLORA... (RWXa)
2b: 2-[(3S,4R)-4-[(3-BROMANYL-4-CHLORA... (RWXb)
2c: 2-[(3S,4R)-4-[(3-BROMANYL-4-CHLORA... (RWXc)
2d: 2-[(3S,4R)-4-[(3-BROMANYL-4-CHLORA... (RWXd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
RWX
4
Ligand/Ion
2-[(3S,4R)-4-[(3-BROMANYL-4-CHLORANYL-5-METHYL-1H-PYRROL-2-YL)CARBONYLAMINO]-3-METHOXY-PIPERIDIN-1-YL]-4-(2-METHYL-1,2,4-TRIAZOL-3-YL)-1,3-THIAZOLE-5-CARBOXYLIC ACID
3
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:172 , HOH A:2026 , HOH A:2036
BINDING SITE FOR RESIDUE CA A1255
02
AC2
SOFTWARE
ASN A:52 , GLU A:56 , ASP A:79 , GLY A:83 , ILE A:84 , VAL A:125 , ARG A:141 , THR A:169 , HOH A:2016
BINDING SITE FOR RESIDUE RWX A1256
03
AC3
SOFTWARE
SER A:36 , GLY A:38 , GLU A:39 , ARG A:40 , GLY A:41
BINDING SITE FOR RESIDUE SO4 A1257
04
AC4
SOFTWARE
VAL B:49 , ASN B:52 , GLU B:56 , ASP B:79 , GLY B:83 , ILE B:84 , PRO B:85 , ARG B:141 , HOH B:2012
BINDING SITE FOR RESIDUE RWX B1255
05
AC5
SOFTWARE
SER B:36 , GLY B:38 , GLU B:39 , ARG B:40
BINDING SITE FOR RESIDUE SO4 B1256
06
AC6
SOFTWARE
ARG C:172 , HOH C:2018 , HOH C:2047
BINDING SITE FOR RESIDUE CA C1255
07
AC7
SOFTWARE
VAL C:49 , ASN C:52 , GLU C:56 , ASP C:79 , GLY C:83 , ILE C:84 , PRO C:85 , ARG C:141 , THR C:169 , HOH C:2022
BINDING SITE FOR RESIDUE RWX C1256
08
AC8
SOFTWARE
SER C:36 , GLY C:38 , GLU C:39 , ARG C:40 , GLY C:41
BINDING SITE FOR RESIDUE SO4 C1257
09
AC9
SOFTWARE
ARG D:172 , CA D:1259 , HOH D:2036 , HOH D:2037
BINDING SITE FOR RESIDUE CA D1256
10
BC1
SOFTWARE
VAL D:49 , ASN D:52 , GLU D:56 , ASP D:79 , GLY D:83 , ILE D:84 , VAL D:125 , ARG D:141 , THR D:169 , HOH D:2012
BINDING SITE FOR RESIDUE RWX D1257
11
BC2
SOFTWARE
SER D:36 , GLY D:38 , GLU D:39 , ARG D:40
BINDING SITE FOR RESIDUE SO4 D1258
12
BC3
SOFTWARE
ARG D:172 , CA D:1256
BINDING SITE FOR RESIDUE CA D1259
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4baea_ (A:)
1b: SCOP_d4baeb_ (B:)
1c: SCOP_d4baec_ (C:)
1d: SCOP_d4baed_ (D:)
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Protein Domains
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Organisms
(
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
automated matches
(42)
Protein domain
:
automated matches
(42)
Mycobacterium smegmatis [TaxId: 1772]
(1)
1a
d4baea_
A:
1b
d4baeb_
B:
1c
d4baec_
C:
1d
d4baed_
D:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (248 KB)
Header - Asym.Unit
Biol.Unit 1 (120 KB)
Header - Biol.Unit 1
Biol.Unit 2 (124 KB)
Header - Biol.Unit 2
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