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4BA0
Biol. Unit 1
Info
Asym.Unit (276 KB)
Biol.Unit 1 (536 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AGD31B, ALPHA-TRANSGLUCOSYLASE, COMPLEXED WITH 5F-ALPHA-GLCF
Authors
:
J. Larsbrink, A. Izumi, G. R. Hemsworth, G. J. Davies, H. Brumer
Date
:
09 Sep 12 (Deposition) - 14 Nov 12 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Larsbrink, A. Izumi, G. R. Hemsworth, G. J. Davies, H. Brumer
Structural Enzymology Of Cellvibrio Japonicus Agd31B Reveals Alpha-Transglucosylase Activity In Glycoside Hydrolase Family 31
J. Biol. Chem. V. 287 43288 2012
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Hetero Components
(6, 24)
Info
All Hetero Components
1a: 5-FLUORO-BETA-D-GLUCOPYRANOSE (5GFa)
2a: ARGININE (ARGa)
3a: 1,2-ETHANEDIOL (EDOa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: TRIETHYLENE GLYCOL (PGEa)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
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No.
Name
Count
Type
Full Name
1
5GF
2
Ligand/Ion
5-FLUORO-BETA-D-GLUCOPYRANOSE
2
ARG
2
Mod. Amino Acid
ARGININE
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
PGE
2
Ligand/Ion
TRIETHYLENE GLYCOL
6
SO4
14
Ligand/Ion
SULFATE ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:271 , ASP A:299 , ILE A:341 , TRP A:410 , ASP A:412 , ARG A:463 , TRP A:477 , ASP A:480 , PHE A:513 , HIS A:540 , HOH A:2233 , HOH A:2308 , HOH A:2310
BINDING SITE FOR RESIDUE 5GF A1818
02
AC2
SOFTWARE
GLN A:77 , LEU A:78 , SER A:229 , GLY A:230
BINDING SITE FOR RESIDUE EDO A1819
03
AC3
SOFTWARE
ASP A:553 , GLU A:554 , ARG A:797 , HOH A:2358
BINDING SITE FOR RESIDUE SO4 A1820
04
AC4
SOFTWARE
ARG A:561 , PRO A:562 , LYS A:565 , HOH A:2365 , HOH A:2555
BINDING SITE FOR RESIDUE SO4 A1821
05
AC5
SOFTWARE
THR A:323 , PRO A:324 , LEU A:325 , ASP A:326 , HOH A:2216 , HOH A:2217 , HOH A:2220 , HOH A:2222
BINDING SITE FOR RESIDUE SO4 A1822
06
AC6
SOFTWARE
ARG A:58 , ARG A:231 , HOH A:2015
BINDING SITE FOR RESIDUE SO4 A1823
07
AC7
SOFTWARE
THR A:732 , ASP A:733 , ASN A:734 , GLN A:735
BINDING SITE FOR RESIDUE SO4 A1824
08
AC8
SOFTWARE
ARG A:123 , GLY A:239 , ASN A:240 , SER A:244 , ASN A:248
BINDING SITE FOR RESIDUE SO4 A1825
09
AC9
SOFTWARE
THR A:97 , GLU A:98 , ASN A:99 , HIS A:100 , GLN A:703
BINDING SITE FOR RESIDUE SO4 A1826
10
BC1
SOFTWARE
ARG A:569 , TYR A:674 , HOH A:2421
BINDING SITE FOR RESIDUE PGE A1827
11
BC2
SOFTWARE
HIS A:731 , THR A:732 , ASP A:733 , GLN A:735 , SER A:764 , TYR A:767 , LYS A:817 , HOH A:2512 , HOH A:2556
BINDING SITE FOR RESIDUE PEG A1828
12
BC3
SOFTWARE
ARG A:176 , ALA A:177 , HIS A:178 , GLN A:187
BINDING SITE FOR RESIDUE ARG A1829
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (276 KB)
Header - Asym.Unit
Biol.Unit 1 (536 KB)
Header - Biol.Unit 1
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