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Getting 'Biological Unit' information from database.
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4B9Z
Asym. Unit
Info
Asym.Unit (275 KB)
Biol.Unit 1 (268 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AGD31B, ALPHA-TRANSGLUCOSYLASE, COMPLEXED WITH ACARBOSE
Authors
:
J. Larsbrink, A. Izumi, G. R. Hemsworth, G. J. Davies, H. Brumer
Date
:
09 Sep 12 (Deposition) - 14 Nov 12 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Larsbrink, A. Izumi, G. R. Hemsworth, G. J. Davies, H. Brumer
Structural Enzymology Of Cellvibrio Japonicus Agd31B Reveals Alpha-Transglucosylase Activity In Glycoside Hydrolase Family 31
J. Biol. Chem. V. 287 43288 2012
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Hetero Components
(5, 23)
Info
All Hetero Components
1a: ALPHA-ACARBOSE (ACRa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
3a: OXALATE ION (OXLa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACR
1
Ligand/Ion
ALPHA-ACARBOSE
2
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
3
OXL
1
Ligand/Ion
OXALATE ION
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(23, 23)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:179 , PHE A:271 , ASP A:299 , LEU A:300 , ILE A:341 , TYR A:376 , TRP A:410 , ASP A:412 , LEU A:413 , GLU A:417 , ARG A:463 , TRP A:477 , ASP A:480 , PHE A:513 , HIS A:540 , GLN A:768 , HOH A:2066 , HOH A:2171 , HOH A:2206 , HOH A:2228
BINDING SITE FOR RESIDUE ACR A1818
02
AC2
SOFTWARE
THR A:323 , PRO A:324 , LEU A:325 , ASP A:326 , HOH A:2153 , HOH A:2158
BINDING SITE FOR RESIDUE SO4 A1819
03
AC3
SOFTWARE
ARG A:58 , ARG A:231 , HOH A:2012
BINDING SITE FOR RESIDUE SO4 A1820
04
AC4
SOFTWARE
THR A:732 , ASP A:733 , ASN A:734 , GLN A:735
BINDING SITE FOR RESIDUE SO4 A1821
05
AC5
SOFTWARE
LYS A:358 , ARG A:753 , GLY A:807 , ARG A:808 , GLU A:809
BINDING SITE FOR RESIDUE SO4 A1822
06
AC6
SOFTWARE
ASP A:553 , GLU A:554 , ARG A:797 , HOH A:2270
BINDING SITE FOR RESIDUE SO4 A1823
07
AC7
SOFTWARE
SER A:764 , GLN A:766 , ARG A:798 , LYS A:817 , HOH A:2366 , HOH A:2407
BINDING SITE FOR RESIDUE OXL A1824
08
AC8
SOFTWARE
ARG A:569 , TYR A:674 , GLU A:690 , EDO A:1826
BINDING SITE FOR RESIDUE PEG A1825
09
AC9
SOFTWARE
PEG A:1825
BINDING SITE FOR RESIDUE EDO A1826
10
BC1
SOFTWARE
LYS A:360 , GLU A:809 , ALA A:810 , HOH A:2389
BINDING SITE FOR RESIDUE EDO A1827
11
BC2
SOFTWARE
ASP A:683
BINDING SITE FOR RESIDUE EDO A1828
12
BC3
SOFTWARE
HIS A:178 , HIS A:184 , GLY A:186 , EDO A:1832
BINDING SITE FOR RESIDUE EDO A1829
13
BC4
SOFTWARE
ARG A:590 , PHE A:610
BINDING SITE FOR RESIDUE EDO A1830
14
BC5
SOFTWARE
GLU A:276 , ARG A:280 , ARG A:753 , THR A:805 , HOH A:2120 , HOH A:2155 , HOH A:2442 , HOH A:2443
BINDING SITE FOR RESIDUE EDO A1831
15
BC6
SOFTWARE
ARG A:176 , ALA A:177 , HIS A:178 , GLN A:187 , EDO A:1829
BINDING SITE FOR RESIDUE EDO A1832
16
BC7
SOFTWARE
GLN A:77 , LEU A:78 , GLY A:230
BINDING SITE FOR RESIDUE EDO A1833
17
BC8
SOFTWARE
ASP A:783 , CYS A:784 , ALA A:785 , SER A:786 , HOH A:2418
BINDING SITE FOR RESIDUE EDO A1834
18
BC9
SOFTWARE
PRO A:562 , HOH A:2275 , HOH A:2276
BINDING SITE FOR RESIDUE EDO A1835
19
CC1
SOFTWARE
ARG A:270 , GLU A:278 , THR A:787 , PRO A:788 , HOH A:2122 , HOH A:2422
BINDING SITE FOR RESIDUE EDO A1836
20
CC2
SOFTWARE
ARG A:176 , HOH A:2062
BINDING SITE FOR RESIDUE EDO A1837
21
CC3
SOFTWARE
ARG A:255 , HOH A:2086
BINDING SITE FOR RESIDUE EDO A1838
22
CC4
SOFTWARE
ASP A:596 , GLU A:597 , LYS A:598
BINDING SITE FOR RESIDUE EDO A1839
23
CC5
SOFTWARE
ARG A:274
BINDING SITE FOR RESIDUE EDO A1840
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
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select residue range 5 to 10 in all chains
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (275 KB)
Header - Asym.Unit
Biol.Unit 1 (268 KB)
Header - Biol.Unit 1
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