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4B9Y
Asym. Unit
Info
Asym.Unit (277 KB)
Biol.Unit 1 (535 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF APO AGD31B, ALPHA-TRANSGLUCOSYLASE IN GLYCOSIDE HYDROLASE FAMILY 31
Authors
:
J. Larsbrink, A. Izumi, G. R. Hemsworth, G. J. Davies, H. Brumer
Date
:
09 Sep 12 (Deposition) - 14 Nov 12 (Release) - 16 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Larsbrink, A. Izumi, G. R. Hemsworth, G. J. Davies, H. Brumer
Structural Enzymology Of Cellvibrio Japonicus Agd31B Reveals Alpha-Transglucosylase Activity In Glycoside Hydrolase Family 31
J. Biol. Chem. V. 287 43288 2012
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Hetero Components
(4, 18)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: OXALATE ION (OXLa)
3a: TETRAETHYLENE GLYCOL (PG4a)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
4i: SULFATE ION (SO4i)
4j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
OXL
1
Ligand/Ion
OXALATE ION
3
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
4
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:323 , PRO A:324 , LEU A:325 , ASP A:326 , HOH A:2249 , HOH A:2251 , HOH A:2256 , HOH A:2259
BINDING SITE FOR RESIDUE SO4 A1818
02
AC2
SOFTWARE
ASP A:553 , GLU A:554 , ARG A:797 , HOH A:2424 , HOH A:2643
BINDING SITE FOR RESIDUE SO4 A1819
03
AC3
SOFTWARE
ARG A:58 , ARG A:231 , HOH A:2019
BINDING SITE FOR RESIDUE SO4 A1820
04
AC4
SOFTWARE
THR A:732 , ASP A:733 , ASN A:734 , HOH A:2579
BINDING SITE FOR RESIDUE SO4 A1821
05
AC5
SOFTWARE
ASP A:124 , GLY A:239 , ASN A:240 , SER A:244 , ASN A:248
BINDING SITE FOR RESIDUE SO4 A1822
06
AC6
SOFTWARE
THR A:97 , GLU A:98 , ASN A:99 , HIS A:100 , GLN A:703
BINDING SITE FOR RESIDUE SO4 A1823
07
AC7
SOFTWARE
THR A:648 , ASP A:649 , GLY A:650 , ALA A:651
BINDING SITE FOR RESIDUE SO4 A1824
08
AC8
SOFTWARE
ARG A:274 , HOH A:2225
BINDING SITE FOR RESIDUE SO4 A1825
09
AC9
SOFTWARE
SER A:63 , GLU A:64 , GLN A:251
BINDING SITE FOR RESIDUE SO4 A1826
10
BC1
SOFTWARE
LYS A:360 , GLU A:809 , ALA A:810 , HOH A:2581
BINDING SITE FOR RESIDUE SO4 A1827
11
BC2
SOFTWARE
SER A:764 , ARG A:798 , LYS A:817 , HOH A:2598 , HOH A:2645
BINDING SITE FOR RESIDUE OXL A1828
12
BC3
SOFTWARE
GLN A:77 , LEU A:78 , GLY A:230 , THR A:432
BINDING SITE FOR RESIDUE EDO A1829
13
BC4
SOFTWARE
ARG A:685
BINDING SITE FOR RESIDUE EDO A1830
14
BC5
SOFTWARE
ARG A:561 , PRO A:562 , LYS A:565 , HOH A:2430
BINDING SITE FOR RESIDUE EDO A1831
15
BC6
SOFTWARE
LYS A:358 , ARG A:753 , ARG A:808 , GLU A:809 , HOH A:2244
BINDING SITE FOR RESIDUE EDO A1832
16
BC7
SOFTWARE
LEU A:566 , ARG A:569 , TYR A:674 , GLU A:690 , HOH A:2647
BINDING SITE FOR RESIDUE PG4 A1833
17
BC8
SOFTWARE
HIS A:178 , HIS A:184 , GLY A:186
BINDING SITE FOR RESIDUE EDO A1834
18
BC9
SOFTWARE
THR A:743 , GLY A:744
BINDING SITE FOR RESIDUE EDO A1835
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (277 KB)
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