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4B9L
Asym. Unit
Info
Asym.Unit (226 KB)
Biol.Unit 1 (218 KB)
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(1)
Title
:
STRUCTURE OF THE HIGH FIDELITY DNA POLYMERASE I WITH THE OXIDATIVE FORMAMIDOPYRIMIDINE-DA DNA LESION IN THE PRE-INSERTION SITE.
Authors
:
T. H. Gehrke, U. Lischke, S. Arnold, S. Schneider, T. Carell
Date
:
05 Sep 12 (Deposition) - 17 Apr 13 (Release) - 03 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Transferase-Dna Complex, Oxidative Dna Lesion, Dna Damage, Trans Lesion Synthesis, Replication
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. H. Gehrke, U. Lischke, K. L. Gasteiger, S. Schneider, S. Arnold, H. C. Muller, D. S. Stephenson, H. Zipse, T. Carell
Unexpected Non-Hoogsteen-Based Mutagenicity Mechanism Of Fapy-Dna Lesions.
Nat. Chem. Biol. V. 9 455 2013
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: [(1R,2S,4R)-4-{[6-AMINO-5-(FORMYLA... (FAXa)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
4a: SUCROSE (SUCa)
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No.
Name
Count
Type
Full Name
1
FAX
1
Mod. Nucleotide
[(1R,2S,4R)-4-{[6-AMINO-5-(FORMYLAMINO)PYRIMIDIN-4-YL]AMINO}-2-HYDROXYCYCLOPENTYL]METHYLDIHYDROGEN PHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
SO4
4
Ligand/Ion
SULFATE ION
4
SUC
1
Ligand/Ion
SUCROSE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:653 , TYR A:654 , ASP A:830 , HOH A:2154
BINDING SITE FOR RESIDUE MG A1877
2
AC2
SOFTWARE
MET A:299 , ALA A:300 , ARG A:343 , ARG A:677
BINDING SITE FOR RESIDUE SO4 A1878
3
AC3
SOFTWARE
HIS A:682 , ARG A:702 , LYS A:706 , HOH A:2156
BINDING SITE FOR RESIDUE SO4 A1879
4
AC4
SOFTWARE
GLU A:632 , LYS A:635
BINDING SITE FOR RESIDUE SO4 A1880
5
AC5
SOFTWARE
ARG A:779 , ARG A:819
BINDING SITE FOR RESIDUE SO4 A1881
6
AC6
SOFTWARE
GLU A:325 , TYR A:327 , ASP A:372 , ARG A:375 , LEU A:395 , ASP A:408 , ILE A:605 , ASN A:607 , HOH A:2062
BINDING SITE FOR RESIDUE SUC A1882
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asymmetric Unit 1
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Asym.Unit (226 KB)
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